RNA id: TCONS_00008561


Basic Information

Item Value
RNA id TCONS_00008561
length 3219
lncRNA type antisense_over
GC content 0.33
exon number 2
gene id XLOC_003278
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11891240 ~ 11903510 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttataaaaCCAGACCAGACAAAAATTAAATCAGAAATTTTAAtgcaaagtgaaataaacagtataATACTCAATGCTTACAACATGTCTGTATACAATTCAATTGTAAAACTATAATCAGAGATAATGCCTGAGAAACTACACAAAGTGAACATGACACTAACCCCCCTGATGAATTAGTTATCAccagaaaatgtattatttgaaaaacaaattctcatgaatgatttttttttttgcacaaaatcTTCTGCATTCCATCAACAGAAAGCTAACactaacacacaaacaaaacacaatattcTGCATTCTGTACTAAACAGACAGctaacacacacaaactgacaaaaaaaaatattacatttagaaaAAGCTATATACATTATGGTCAGTGTACTTCAGATATTAAGgtgaaattttaataaaaaataattgcgtCAATCACACATTTgcataaaatgaaagaaaatttaAGGTAAATATATGAGTACTTTAATTTCAAATCCAATTATGAGGTGTAAAAGTACTGTTTTTTCAGGAATATATTCAAGTATTTGTACAGTAAAGTACAAAATACTACATCccccaaaatactaattaaataatacagtaaaagtGCTCAAGTATTTCACACCGCTGgttggttttgggaaacacaaaATTACTGAACTACGTCATAACAATGAAACTTGCAAGCAATGAAGATTTTTGAAAACACACTTTTAAATGGCTTTGAAAATGTAATAATTGACATGCAGATTTTGTCAACGTGTGCAAATATTTTTGATATAACaacacattttttctttttacaattattaaaaaaaatgttttctaaataacCCTCAGCCAAGGGTATATTACTTTATTTGAGTTGGAAAACAgccgacaacaacaacaactgtacATTTGTGCAAATGTGTTAGCAgtaatatttcacaaatatttatatacatcCTTCAAAACAATTACCCCTACTGTACCTTACTAGATACTTCATGGCACAGAAATATCTGCAATAACAGATAAGTAActttaaaaagaagaagaaaaatgtcAATACACAAAAAAGCTTTTTACATATGTATAACTTACCCACATTGTACACATTACTTTAACATTATGTagaatttacaaaaatataaagtTTGCAATATCCATGCTccgttaaaaaaattaagaaaaacgtTTTAGTAAAACCTTTATAAATCTTTAGTAAGTGCACATGATACTATTCAATTTAAAATACATGTATAACACATTGTTTATGGAAAGGTGAAGAAATCGACATCTACTCgaattattttatacataaagGTTGCGGCAATCAACCCACTATTGTCAGTTCTGATAAAAATGATTAGAAAGCACAAGCTCAACCATGTCTTCCCattcactttttttaaacttatcCTACTACATTAGTTTAAGGACATTCATTTTTGACCCTTTCAACGTGCTTTCTGGAACCTCCAGATCCATTGCTTGTATTTGCAGATGTCTCATTGTGCGTCTGCGACTATAGTCACTTTGCTCGTTTCCCCGACCATCTCTTCTAGGCATCCCTTTGTAAGTGTAACAAATGTCATCAGTAGTGTAATGACGTCTTGGAACCATTTGAGTTTTCCTATAATATCTTGCATCACCTCCCCTATGGGGTGAGATTTGCTTCGGACTCATTCCCATATTTGAATTTCTCACAGGCAAATTCTCAGTTCTGGTTGGGGCTTGAAGTTTAGGCACTGATATTTTGTTCCAGCTGTCATCAATTTCAAAGTTACTCCCCGTTCTTTTATGATCTCTTGATCTGTGTGCACCAGACATTTCGCTGTAGTAAACATCTGATGATGTTGGAACTACTCCAGAGGTTCTGGGTCTTGGGGTTGGTAAAGCCATTGTGACATCGGGTGAGTCGGGGAGATGTCTTGTCATTTTAGGCCTCTGGGCTTTTCCTGAAATGTTCATACCACTGTTCAAATCAAAATAAGGGTCCTGCATGGTGAATTTTGAGGTACCATATTTCTGATGGTTTGGCATTCTAATGTCTCTTAAGGAAGGATCTAGATCATATGTTTTGCCTGCCTTTATATTACCTCTTGGAATTGCAAAGTTGTTGGCGTGCATTTTTGTATAGTCATGGAAATCATCATTAGACCCCAGGCCTTGAAAATCAGGGTTATCTAATTCTGGTGTGTAGACATCGAGATTGGGTTTGAAATTGGTTGCCTTTATTTTGCCTTTAGGAAAATCAACATTCTTGTCTGGGACTCTGAAATCAGGTTTATGACTCCTGGTACTTAAATCTGGTGAATTAAAGAGATCTAAATTAGGGGCCTTTAAATCATAGTCGGGTGTCTTTATTTTTTGTCCAGAGAAACCAATATCAGGCATCTTAAATgtggatgtttttatttttccagatggcatttctgttttGGGAAGTGTAAAATCACCATTAGGTCCATGAATGTTAAAATCAGGATGATTAATCCCAGCATTTAGTTTGGGAGGTGATGAACTAAGACGGATGTCTGGATGATCAATGTCATCATCAAAATGTGGCTCTTTCAAACCTGACAGACCCAAACTGGGCATTTTTAACTTGGACATATTAAATTTACCTGAAGGGCCATTAACATCAATATCAGGtggtctaaaatctaaatttgaaGTTTTCAGATCAGTCTGAGGCAGAGTCAAGTCCATTCCCGGAGTTTCAAAATGTCCACAGCTTCATTCTTCTTTTGTTTATTCCTTTTTAGCTCAAGCTGATCACTGGCACCAACAATATCTTCCCCTAAAAATTGCAATGTGAAAATTATCAACATTTTTCATTACGCAGAAGTTCCCTTAGCAAGAATTTTTAATCAtcctttaaacacaaaattgattGGTGGGTTCAGGGCAAagttattttgtaataataaagtataaaaaggaaaatataagtttacaacatcaagcagcagaacaatctgttttttttgttgttttttttttgctgctaaaAATTAGAGAAAACAAATGAGACCATAAGTCTAAACCAATAGGTATTGATGGCTGAACCCACACTTACACCAAAGAATAAGACCAATAAGAAGTTCTTTGTAAAAAAGTGATGCTATGATGCTCAATAACTTTATAGTGATCGTATAGTGATAGTATTTTAGGACTGGGCGATTAGGCAATTTTCATGCATATTTTCTCAGTAAAATTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008556 lncRNA upstream 15423 11839827 ~ 11876130 (+) True XLOC_003276
TCONS_00008555 lncRNA upstream 20406 11833344 ~ 11871147 (+) True XLOC_003275
TCONS_00008554 lncRNA upstream 37107 11820364 ~ 11854446 (+) True XLOC_003274
TCONS_00008392 lncRNA upstream 68399 11809223 ~ 11823154 (+) True XLOC_003273
TCONS_00006452 lncRNA upstream 95254 11792408 ~ 11796299 (+) True XLOC_003271
TCONS_00006458 lncRNA downstream 262976 12166486 ~ 12166790 (+) True XLOC_003282
TCONS_00008393 lncRNA downstream 563256 12466766 ~ 12467060 (+) True XLOC_003302
TCONS_00006480 lncRNA downstream 590362 12493872 ~ 12494177 (+) True XLOC_003304
TCONS_00008394 lncRNA downstream 619260 12522770 ~ 12523029 (+) True XLOC_003307
TCONS_00006494 lncRNA downstream 814599 12718109 ~ 12718402 (+) True XLOC_003319
TCONS_00006454 mRNA upstream 41558 11842724 ~ 11849995 (+) True XLOC_003277
TCONS_00006453 mRNA upstream 86833 11797026 ~ 11804720 (+) True XLOC_003272
TCONS_00006450 mRNA upstream 109642 11751006 ~ 11781911 (+) False XLOC_003270
TCONS_00006449 mRNA upstream 109642 11751006 ~ 11781911 (+) False XLOC_003270
TCONS_00006448 mRNA upstream 110321 11719575 ~ 11781232 (+) False XLOC_003270
TCONS_00006455 mRNA downstream 71198 11974708 ~ 11979854 (+) True XLOC_003279
TCONS_00006456 mRNA downstream 149281 12052791 ~ 12092178 (+) True XLOC_003280
TCONS_00006460 mRNA downstream 271652 12175162 ~ 12184543 (+) False XLOC_003284
TCONS_00006461 mRNA downstream 272817 12176327 ~ 12184260 (+) True XLOC_003284
TCONS_00006495 mRNA downstream 816434 12719944 ~ 12728353 (+) False XLOC_003320
TCONS_00006445 other upstream 378141 11504261 ~ 11513412 (+) False XLOC_003268
TCONS_00006440 other upstream 428951 11462306 ~ 11462602 (+) True XLOC_003267
TCONS_00006439 other upstream 430451 11460806 ~ 11461102 (+) True XLOC_003266
TCONS_00006438 other upstream 441111 11450155 ~ 11450442 (+) True XLOC_003265
TCONS_00006437 other upstream 449797 11441460 ~ 11441756 (+) True XLOC_003264
TCONS_00006457 other downstream 259242 12162752 ~ 12163048 (+) True XLOC_003281
TCONS_00006459 other downstream 267785 12171295 ~ 12171591 (+) True XLOC_003283
TCONS_00006462 other downstream 283796 12187306 ~ 12187602 (+) True XLOC_003285
TCONS_00006463 other downstream 286215 12189725 ~ 12190024 (+) True XLOC_003286
TCONS_00006464 other downstream 305399 12208909 ~ 12209205 (+) True XLOC_003287

Expression Profile

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