RNA id: TCONS_00006466


Basic Information

Item Value
RNA id TCONS_00006466
length 297
RNA type misc_RNA
GC content 0.60
exon number 1
gene id XLOC_003289
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12223462 ~ 12223758 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gccgggttcagtggcgcgcgcctgtaatccaagctactgggaggctgaggctgcggatcgcttgagctcagggcttctggGCTGCAGTGGACTATGTTGATCGGGTGTCCGCGCTAAGTTCGGTATCGATATGGTTCTCCTGGGGGAGCTCGGGACCACCAGGTCGTTTAAGGAGGGGTGAACCGGCCCAGGTCGGAGACGGAGCAGGTCAAATCCCCCGTGCCGATCAGTAGTGGGATTGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAgcgacacagagagacgcagacttT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000180005

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006458 lncRNA upstream 56672 12166486 ~ 12166790 (+) True XLOC_003282
TCONS_00008571 lncRNA upstream 319952 11891591 ~ 11903510 (+) False XLOC_003278
TCONS_00008393 lncRNA downstream 243008 12466766 ~ 12467060 (+) True XLOC_003302
TCONS_00006480 lncRNA downstream 270114 12493872 ~ 12494177 (+) True XLOC_003304
TCONS_00008394 lncRNA downstream 299012 12522770 ~ 12523029 (+) True XLOC_003307
TCONS_00006494 lncRNA downstream 494351 12718109 ~ 12718402 (+) True XLOC_003319
TCONS_00006501 lncRNA downstream 520877 12744635 ~ 12752361 (+) False XLOC_003321
TCONS_00006460 mRNA upstream 38919 12175162 ~ 12184543 (+) False XLOC_003284
TCONS_00006461 mRNA upstream 39202 12176327 ~ 12184260 (+) True XLOC_003284
TCONS_00006456 mRNA upstream 131284 12052791 ~ 12092178 (+) True XLOC_003280
TCONS_00006455 mRNA upstream 243608 11974708 ~ 11979854 (+) True XLOC_003279
TCONS_00006454 mRNA upstream 373467 11842724 ~ 11849995 (+) True XLOC_003277
TCONS_00006495 mRNA downstream 496186 12719944 ~ 12728353 (+) False XLOC_003320
TCONS_00006496 mRNA downstream 496230 12719988 ~ 12727230 (+) False XLOC_003320
TCONS_00006497 mRNA downstream 496413 12720171 ~ 12727529 (+) False XLOC_003320
TCONS_00006498 mRNA downstream 496550 12720308 ~ 12727651 (+) True XLOC_003320
TCONS_00006499 mRNA downstream 520817 12744575 ~ 12770546 (+) False XLOC_003321
TCONS_00006465 other upstream 7834 12215328 ~ 12215628 (+) True XLOC_003288
TCONS_00006464 other upstream 14257 12208909 ~ 12209205 (+) True XLOC_003287
TCONS_00006463 other upstream 33438 12189725 ~ 12190024 (+) True XLOC_003286
TCONS_00006462 other upstream 35860 12187306 ~ 12187602 (+) True XLOC_003285
TCONS_00006459 other upstream 51871 12171295 ~ 12171591 (+) True XLOC_003283
TCONS_00006467 other downstream 23930 12247688 ~ 12247984 (+) True XLOC_003290
TCONS_00006468 other downstream 32673 12256431 ~ 12256727 (+) True XLOC_003291
TCONS_00006469 other downstream 68187 12291945 ~ 12292241 (+) True XLOC_003292
TCONS_00006470 other downstream 93856 12317614 ~ 12317910 (+) True XLOC_003293
TCONS_00006471 other downstream 102448 12326206 ~ 12326502 (+) True XLOC_003294

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU121473 True 343 lncRNA 0.58 2 NC_056709.1 15197912 ~ 15202535 (+)