RNA id: TU122006


Basic Information

Item Value
RNA id TU122006
length 1897
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G90674
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 38575361 ~ 38579029 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTATTCTTTTTGACCAAGTTCAAATATGATGGCAACAGTAAACATAAAGCCAGTTTGTAAGACAACCTGTACACGGGTTACTGGCTTTAAGAAAGCCTTGGTCCTTTAATATACAACAGCATGTAATATAATTCTCCTCATAATTGTTCAACTGAATATTCCATCAATGTTTACATGTAGTAAAACATTCCATCAGTACTGCATGGGCATTTAAAACTGCTGGCAAAGCAGACATTCGTTATCAAAATGACCGCAGAGTCTCATGGCATCTGGTTCTTTTCTTCTGGGTTTCTCTTGAACTCTATTTCTGTCTTGCTGATCTTGTCTTCTTTCTGGTTGAATGTTTCATCACTGCGTCTGTAAGAGGAGCTGCTCTCTGCGCTCTGCACTGATGAAGAAGCGGAGTTTTCTCGGCAGCAGCCTGATCTCTACAGGCATGGCTTCATACTCCTCGTTGTCGATGTTGTAGAAGCCGGCGGCGCCCTCTGGCAGCTGCAGCCGGCAAGCACTGGCTTCCAGTTTTGTGGAGTCTTTGGTGAACACAGTGGGgtcctcttcttttttatttCCGACAGTGATGTACTCGCCCACGGTCAAATTGTCCGGTTCCGCACAGATCATCAGGGAGTCATTTATGCGCCTCTCGACTGGGTTCTTGTTGTGCGTTTGAATAAACAGCTCCAACGTCGACAGCTGCTCCTCCTTCCACTGCTCTGGTTCTTCCACTTTTGGAGGCTctgcgcaaacacacacacacacgcacacacactacaaCTCAGTCTTTTACTGTTGGGATTTGGTGTTCATGTTGCCATGTTGCGATCCAAAAGTATCCACCCAGTGACACACGCTACCTTCGACAGGAGGGTTCCAGCGGTTTTTCAGCCTGCGGATGATGCGGTAGAGCAGGTTGGGTCTGGGGGGCTTCTGAGATGGCAGGTCAGGGGGCCGGAGGCTGGGATCCAGGTAGGACACTGAGACGTCCCGGACCAGGGGCCACTCCTGAGAGATTTACAACCGAGTAAGACTAAAATACTAATCAGCAGCCACCGAATTATAACAAGGTGGCATTTTAGCCTCCTGGACTGTCATCCAGGTATGTAGTGATCTGTGTGcccttttttttatctgcatttTCTTTTCTACCTGTGTCAAGTGTGATCCCATGTGGGATAtcgtatgtgtatatattagctctatgtttttgttgtattttgttgaTGTCTTGTCATGAGCACACTGAAGCAAATTCCTAGCAACTTGCACCGAGTTGTATGGCAATAAAGTATTGAATCTTGAAACGGGGGGGGGAGACATGAAATACAGCAATAACCTCATGACATCTACTGTATCTTATAGACGATTGATTTGATTAGATTTATAGataatgtagggctgggcgatatggagaaaatcaaatctcacaatatttttgaccaaatacctcgatattgataccgcaactatattgtagtgttgactattggtgctttcacaaaatatttacacaatgagatttttgataaataatcatcagtaatgtggatataatgactaagtgggtaaaggcaaataatagaacagctagaacagtctggtaagttcagaaaatgacatcactttactgtaatccagcctttaaaatcaggaaaagacttatgtcatatcacgatattacaatatccaaaatctaagacgatatctagtctcatatcacgatatcgatataatatcggtatattgcccagctctaagaTAAGGGATTAGATTTATGACATACTTAAAGTATATTTTTGTCAGGATGGAAAACTTCTATAGCAGAATTTGGATCATTATAGGATACTAGGATTACACTAAAACCTACACTTATATAATAGGATTCAATTTtaggattat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121979 lncRNA upstream 17210 38556657 ~ 38558151 (+) False G90653
TU121980 lncRNA upstream 17210 38556657 ~ 38558151 (+) True G90653
TU121985 lncRNA upstream 19649 38552327 ~ 38555712 (+) True G90655
TU121956 lncRNA upstream 121045 38452802 ~ 38454316 (+) True G90635
XR_005640022.1 lncRNA upstream 271716 38302302 ~ 38303645 (+) True LOC120563884
TU122018 lncRNA downstream 37683 38616712 ~ 38622899 (+) True G90682
TU122021 lncRNA downstream 74991 38654020 ~ 38665353 (+) True G90685
TU122030 lncRNA downstream 108455 38687484 ~ 38692021 (+) True G90692
TU122049 lncRNA downstream 161885 38740914 ~ 38743012 (+) True G90703
TU122055 lncRNA downstream 209879 38788908 ~ 38789350 (+) True G90706
XM_039810041.1 mRNA upstream 4737 38563908 ~ 38570624 (+) True dennd11
XM_039808806.1 mRNA upstream 27863 38529277 ~ 38547498 (+) False bcl2l13
XM_039808805.1 mRNA upstream 27863 38529282 ~ 38547498 (+) True bcl2l13
XM_039808876.1 mRNA upstream 58758 38505930 ~ 38516603 (+) False slc25a18
XM_039807692.1 mRNA downstream 3845 38582874 ~ 38606852 (+) True nup205
XM_039807693.1 mRNA downstream 3845 38582874 ~ 38606852 (+) False nup205
XM_039810058.1 mRNA downstream 146478 38725507 ~ 38740297 (+) False zgc:110789
XM_039810057.1 mRNA downstream 149434 38728463 ~ 38740297 (+) True zgc:110789
XM_039809898.1 mRNA downstream 165859 38744888 ~ 38768574 (+) True LOC120564709
TU121880 other upstream 519797 38054509 ~ 38055564 (+) False G90583
XR_005640145.1 other upstream 540667 38022377 ~ 38034694 (+) True wfdc1
unassigned_transcript_383 other upstream 2111793 36463486 ~ 36463568 (+) True trnal-cag_1
TU121355 other upstream 2789945 35784694 ~ 35785416 (+) True G90142
unassigned_transcript_382 other upstream 3364430 35210860 ~ 35210931 (+) True trnaw-cca_9
TU122023 other downstream 79337 38658366 ~ 38680087 (+) False G90686
TU122022 other downstream 96546 38675575 ~ 38680087 (+) True G90686
TU122034 other downstream 298021 38877050 ~ 38879902 (+) True G90693
unassigned_transcript_385 other downstream 1174565 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122542 other downstream 1292661 39871690 ~ 39874177 (+) True LOC120563436

Expression Profile