RNA id: TU122393


Basic Information

Item Value
RNA id TU122393
length 280
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G90927
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 39366296 ~ 39366575 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGACTCCCACAGACACCTGTTGATTGTTGACTCGTACTGGGTCCTGTTTCAGggctgactccatggcaaccggctGTGTATCGCAATGACAATCGTGCGGACTGAGTAAACCAGATTACGGGGGCCAGACGTAGCTTGACTTAACAggcctacacatacacaaactttgacatacatacagatttgCAACCACACCCCAGCCCCCTATCCAGCGCCTTCACCGCTTCTTCCCCCAGTCAGGCGGGCAGGTCTGGGGCCAGcgcctttgtttggctgcag

Function

GO: NA

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122332 lncRNA upstream 171762 39193745 ~ 39194534 (+) True G90875
TU122322 lncRNA upstream 342045 39024015 ~ 39024251 (+) True G90868
TU122080 lncRNA upstream 495697 38870097 ~ 38870599 (+) True G90722
TU122075 lncRNA upstream 532919 38829741 ~ 38833377 (+) True G90718
TU122037 lncRNA upstream 575617 38790123 ~ 38790679 (+) True G90694
TU122395 lncRNA downstream 56 39366631 ~ 39366941 (+) True G90929
TU122397 lncRNA downstream 11319 39377894 ~ 39378094 (+) True G90931
TU122418 lncRNA downstream 58721 39425296 ~ 39426186 (+) True G90948
TU122442 lncRNA downstream 79298 39445873 ~ 39493156 (+) True G90960
TU122431 lncRNA downstream 140453 39507028 ~ 39511918 (+) True G90957
XM_039809314.1 mRNA upstream 78069 39260389 ~ 39288227 (+) True pard6a
XM_039808941.1 mRNA upstream 347511 38897554 ~ 39018785 (+) False LOC120564171
XM_039809162.1 mRNA downstream 37975 39404550 ~ 39411863 (+) True LOC120564312
XM_039808680.1 mRNA downstream 107787 39474362 ~ 39493938 (+) False LOC120564044
XM_039808678.1 mRNA downstream 107787 39474362 ~ 39493938 (+) False LOC120564044
XM_039808677.1 mRNA downstream 107788 39474363 ~ 39493938 (+) True LOC120564044
XM_039808685.1 mRNA downstream 131665 39498240 ~ 39506583 (+) True LOC120564047
TU122034 other upstream 486394 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 686209 38658366 ~ 38680087 (+) False G90686
TU122022 other upstream 686209 38675575 ~ 38680087 (+) True G90686
TU121880 other upstream 1310732 38054509 ~ 38055564 (+) False G90583
XR_005640145.1 other upstream 1331602 38022377 ~ 38034694 (+) True wfdc1
unassigned_transcript_385 other downstream 387019 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122542 other downstream 505115 39871690 ~ 39874177 (+) True LOC120563436
TU122992 other downstream 1587033 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 2099129 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 2102668 41469243 ~ 41495311 (+) True vps9d1

Expression Profile