RNA id: TU122397


Basic Information

Item Value
RNA id TU122397
length 201
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G90931
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 39377894 ~ 39378094 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGGTACTGACGACCCCTGCCGCGCTTCCTGACGGCCAGAAGTTTCTTAACCGTATACACGGGACCCCCATCGATGatgcgaggaggaggaggggccgGAGCCTCAGGAACCAGCGGACTCGCCAGAACCGGCTTGATTCGGCTCACATAGAGGGTGGGATGCACCTTCATGGTCCTAGGAAGTGTTAGCCTCACAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122395 lncRNA upstream 10953 39366631 ~ 39366941 (+) True G90929
TU122393 lncRNA upstream 11319 39366296 ~ 39366575 (+) True G90927
TU122332 lncRNA upstream 183360 39193745 ~ 39194534 (+) True G90875
TU122322 lncRNA upstream 353643 39024015 ~ 39024251 (+) True G90868
TU122080 lncRNA upstream 507295 38870097 ~ 38870599 (+) True G90722
TU122418 lncRNA downstream 47202 39425296 ~ 39426186 (+) True G90948
TU122442 lncRNA downstream 67779 39445873 ~ 39493156 (+) True G90960
TU122431 lncRNA downstream 128934 39507028 ~ 39511918 (+) True G90957
TU122491 lncRNA downstream 312385 39690479 ~ 39693930 (+) True G91002
TU122522 lncRNA downstream 325228 39703322 ~ 39703733 (+) True G91028
XM_039809314.1 mRNA upstream 89667 39260389 ~ 39288227 (+) True pard6a
XM_039808947.1 mRNA upstream 359109 38906004 ~ 39018785 (+) False LOC120564171
XM_039809162.1 mRNA downstream 26456 39404550 ~ 39411863 (+) True LOC120564312
XM_039808680.1 mRNA downstream 96268 39474362 ~ 39493938 (+) False LOC120564044
XM_039808678.1 mRNA downstream 96268 39474362 ~ 39493938 (+) False LOC120564044
XM_039808677.1 mRNA downstream 96269 39474363 ~ 39493938 (+) True LOC120564044
XM_039808685.1 mRNA downstream 120146 39498240 ~ 39506583 (+) True LOC120564047
TU122034 other upstream 497992 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 697807 38658366 ~ 38680087 (+) False G90686
TU122022 other upstream 697807 38675575 ~ 38680087 (+) True G90686
TU121880 other upstream 1322330 38054509 ~ 38055564 (+) False G90583
XR_005640145.1 other upstream 1343200 38022377 ~ 38034694 (+) True wfdc1
unassigned_transcript_385 other downstream 375500 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122542 other downstream 493596 39871690 ~ 39874177 (+) True LOC120563436
TU122992 other downstream 1575514 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 2087610 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 2091149 41469243 ~ 41495311 (+) True vps9d1

Expression Profile