RNA id: TU122418


Basic Information

Item Value
RNA id TU122418
length 832
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G90948
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 39425296 ~ 39426186 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctggtctttgagcatttattatattttgcaaaatatgagaatacagattcaaaaggtacatgcagtacaactgaatgagcattacTAAAGAATTCTaaacatcatatcatcatatagtcaaaaccctctctcaagccacccctctaactttatcttttagcctggTCAGAGTTGAAAATAGGACATCATTAGAAGTCAACCCATCCttaccttcccctctgctcctgttcttttcattagcctaaacaaccctttatctcaggaggcagaaggaaaCATGGTTTTGTGGCCTTCTCTACTTTGTCagctaaaaagttaaacaaaatgagaagctagagcttcttaaacaaaaaccactaggctaatagttcatggctgctgctgtccctctctggcctttaagagtctaagaggaaggaacagcatttttgtggaggtttaaaacaatctttaagcaaatggttataatcattaatcaataatggttaaaataaaatttgccaccacagtccacccttttgattacaacataatcacacaaaataaattttactttaaaaattcaAACCTTATTTCTTAAAGATTCAAACTTATGGATATAATTGTCTATTGctgaaatgctgttttttaaAGAGGTACAAAAGAAAACCCTTTTTAATTGTAGCAAGCGTTCACGTctaagtaaaaataataaaacaaaaaattttaATCAGTCTCACACAGTATCAGAAACAGTATCCAGAACCTCATCATCATATCTGGACATACGAAACAAGTCAGAGGACTCAGTATTCTGAAGTGCCTGATACTGTATcatatttaccatgaagat

Function

GO: NA

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122397 lncRNA upstream 47202 39377894 ~ 39378094 (+) True G90931
TU122395 lncRNA upstream 58355 39366631 ~ 39366941 (+) True G90929
TU122393 lncRNA upstream 58721 39366296 ~ 39366575 (+) True G90927
TU122332 lncRNA upstream 230762 39193745 ~ 39194534 (+) True G90875
TU122322 lncRNA upstream 401045 39024015 ~ 39024251 (+) True G90868
TU122442 lncRNA downstream 19687 39445873 ~ 39493156 (+) True G90960
TU122431 lncRNA downstream 80842 39507028 ~ 39511918 (+) True G90957
TU122491 lncRNA downstream 264293 39690479 ~ 39693930 (+) True G91002
TU122522 lncRNA downstream 277136 39703322 ~ 39703733 (+) True G91028
TU122529 lncRNA downstream 328432 39754618 ~ 39757562 (+) True G91034
XM_039809162.1 mRNA upstream 13433 39404550 ~ 39411863 (+) True LOC120564312
XM_039809314.1 mRNA upstream 137069 39260389 ~ 39288227 (+) True pard6a
XM_039808947.1 mRNA upstream 406511 38906004 ~ 39018785 (+) False LOC120564171
XM_039808680.1 mRNA downstream 48176 39474362 ~ 39493938 (+) False LOC120564044
XM_039808678.1 mRNA downstream 48176 39474362 ~ 39493938 (+) False LOC120564044
XM_039808677.1 mRNA downstream 48177 39474363 ~ 39493938 (+) True LOC120564044
XM_039808685.1 mRNA downstream 72054 39498240 ~ 39506583 (+) True LOC120564047
XM_039808681.1 mRNA downstream 88949 39515135 ~ 39528042 (+) True LOC120564045
TU122034 other upstream 545394 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 745209 38658366 ~ 38680087 (+) False G90686
TU122022 other upstream 745209 38675575 ~ 38680087 (+) True G90686
TU121880 other upstream 1369732 38054509 ~ 38055564 (+) False G90583
XR_005640145.1 other upstream 1390602 38022377 ~ 38034694 (+) True wfdc1
unassigned_transcript_385 other downstream 327408 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122542 other downstream 445504 39871690 ~ 39874177 (+) True LOC120563436
TU122992 other downstream 1527422 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 2039518 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 2043057 41469243 ~ 41495311 (+) True vps9d1

Expression Profile