RNA id: TU122431


Basic Information

Item Value
RNA id TU122431
length 3955
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G90957
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 39507028 ~ 39511918 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aatttaatttaatataatttggTGGAATGTTAGAGGCTTAGGAAGATAGTGAAATCAAAGCCAGTAATGGCCAGACAAAATTTGCTTTTATTCAAAAAAGGCATTTACTCCCAACTGAATTTATTCCTTTAAAAAAGAGAAGTAGCAGCTTCCTCATTTTCCTCTCAGTCAAGAGGGGTTGATTACTGCACACATCTGTTCAACTTCAGATACATAAAACCATACAAGATCATCTGAGGTTCATAAAATAAAGAACATTTAGTAAGTAGATATGACCCCAATGATAATGATAGAAATGTAGATGATAATGTGTTTCCAACTCTCAGcattacatggtttaatttttatGGCGGGGGATGTTAACTGGAATCCTAATCCAAAACTGGACACATTTCCGGACGTGGATGCTTGTCACACAcgctgtaaaatgtcagaaaacagttCATTTGTAAGTTGAACCTTCAAGTTATGAATATTCATGTCGTTATGCTACTTATTTATACTCGGACATTGACTATTTCCACATGTTGTATCATAAACCGTTGACACAACTTGAGTAACGTGCAGTGGAAAGTTGTGAGAACTCTGGCAAGTGCTTGCTATTTACACAGCTGTGGGTTGGGAAGTTATATTAAAAAGAACTTGAATTTAAAGGAGGAAAAGCAAACCTGAGTTAGGGCAGAgtaaacagaaagaaaagaccAAATAGATCAGGGAATATTCTAgaaaaattaaaacaacaaaGTGAAAAGATCCATttgaaatatacagtatctactgCCTAACTGGTGAGAGGAGAATAAATGAGTCCTTGTCATGTATTTCCTGTGCTTATCTGATTATATATACCTGAAAGCTTCAGCCACTGACAGGATGAAAGAGGGATTGCAGCCTTAGCTTTTTTATGTAGAACAAGGTGGTACCAAATAGGACATTTAACACACATTTATCAACTATATGTtctattaaaggtgcagtaagcgatgCTGCGCTTATTATTGTGGAGCATACATTAAACTCCTTTGTGTGCATCCATTTCACGATGGACGATGGGGCCCTCCCTGATCCATCTTATGATTGCGAACAAATTCAGCCCTGTGCAcccctttctgtttgttttccatttaaaaggccgttttgttttttagcgcacacagaaaatagagagctaAATGACTGTGAGGAGATATTCACTCAATTCGACAAAAAAGTGTACTCAATAACATCACTTATTGTAcctttaaaatattatttatttggaTAGCAGCTGttgctcaggtggtagagcaaTCGCTTCCTAATTGGAGGGTCCTTGCAGTCTACATGTTGTGTCCTGATGAAGATTCTCAGCCTGTCTCGTTGGTTAATTATAGAAATGTGAATTGTTAACAAAATAATATCTAAAACTATAaggtaaatcattttttttatatttcgtTTTAAACCCAAATATACAGGTTTCAGGAATGTTAATAGCATAGCTATTGTTATAAGATTTGGCCTCAAACTGGTAAAGTTGATCAACTATTACATCGTCAAACTGTTACCCAAGCCCCAACTTGCATTCTTGATGTTGAAGTTGTATTGTTACATTTTCTGTATAATACACAGAGGGCCTTGTACCGTCTGGATGGGGATGTTGATCTCTTGTTCTGGATCGTTCTGTATAACACAACTGAAACCACTGGGTGGAAATGGGTGGATGGATCTGCGCTGACCAAACCATTTTGGCAGTCTGGCCAGCCGGATGGTGGTGGTCCAAACAACGTGGAGGACTGTGTGGAGATGTATCACAAGAACCCAGTGCTGGCCAGCTGGAATGACGCCCCCTGTGGAGCCAAGCGCCGCTGGCTGTGTGAGAAAGATCCGGCTGGAAAGATCCTCGCCTAGGCTGATagtcacaaaaatacattataacaatgaaaaactgaaatatgggTAAACAAAATAAGCAAATCTCAGTGAGAATTAAAGTAATATTTACAATTACAAAAGACTAATTTGTGCAAGTTGGTGATGCTTTAGATATTATATGATACACTTTGTGACATACTTTGTGTTGCTTGGAGGTATTTTGTGTTGCCTTTGTGCTAAATcgaatgtattattatttggtagattattgtttttttactaGCTTTTAGTGGGAAGCTCCATTTGTTGTTAATATATACAGTTAATGAATAGAGAAAGCATATCCTGTTTTCTTGTTATTGTAGTGTAaaccagaaaacaaatacaaaaatataggcGCAAACGAGATTCGCGGGTTCAAACCCTTTCTCAGCCAACAGAAGGCTGTAGTTCTAGTAGATTCTGTAGTTTGTAGTCTTAACAActaactcaaagtgcttttacaTACTACAGGTACCATTCACACACTGGTGGCTGAGGCTGCCATATAAGGTGCCACCTGCttatcagataaacattcacacacaatcacacaccgatggcgcagcatgGGAGAAATTCGGGGgtcccaaggacacttcaacatgggACCGAAGGGCTGATCAAACTAGCAACCTTCCGATTGTTAGGCTACTGCtgtaccacctgagccacagctgcaGCCCAAGGAAGCAGCCCAATCGCCAAAGTCAAAGACGCAGGCAGTGTTGAGCGGGTTTCTAGCTTCACAACGCTGAGCAAAACCCATTCAGATGGTAAAGTGCTCTATATCAAGCACACACCTGTTTCATCAGTACAATAGATGCAGCATTTCATTAAGTCCTGTGATTTCACCCCACTTTATCAGATTTTAAGGTCGTGGTGTCAGATGTCTCCATTCATGTTAGACAGGATTGCTGTGGAAGAACCTGAGTTATGGACAATTTCCTGCCAGTTAACTGGCTGACCATGAGGCAGAGCATGAGGCGGGACCCCCCTCATGTGCAACAAAGCCTGCCTACTGGAATATGCCCATCTCTTTTACAGACAAGAGAAGGAGGGGCACTGAAGCTGAGGGGGACTGGCTCGTGGCCTTTGGCAAGATGAGGTACAGGGAGTTACACTCAGTCTAAATTCAAATGCAAAAGCAacaagtttgtaagtacattttTTGTAATTGTCGTCGTATTTTCTTATTATGTTACAGTATTTATTGCAGTATTCTGCTGATGTTTGTTGTCTTTAATTAGAAAAGAACTTATCTCAAAACTACACAGTCAAAATAGGTCATACTATTTGTGCATGAAGTTTGATAAGTCCAAaagatattattatatttgtgtACTACTTGTAGAAATGAATGAAGGAAATCAAAGTTAGACAAAAAGGCTTATTCTTGTTCTCTGGAAAGGACAAATGTGGTCATCTCTAAATTCATAAAGTAAAAGTGCTTCTAAAAGTGACTCTATGTAGTCAGAGATGTCCTcagtggcgtaacgagccaacaccagACCCCTATGCAGTATTATCAAGGCACGTGATGACTGCgcaatgtccacgagtaggctaccatgactaggacaggataggatcatagagacactgcatataagagatgagatgacacataaaaaaacacacaagggcagtCCTTCCTGGATTTCGTGGCCTTTTCACCAAgcttttgtattcatagaaacagcaaaatttcaaagtggcttgtttggtgcatattttttgCTTTGGCTAATTTGAATGTCAATTATATAAATGATAAGCTGTAAATGTCTAGCTTCTTAGATATATTAATGTTGGCTGTATGGAGCCCTTACTGTCTATTCACCTGAGCCACCCCTGCATTGTATTGTTGTGTTGGTATGTTCCAATTTGTGGGGCGGGGCTTCAGGCTATATAGCCTAGCAGTAGTATTTGTTCAAGAGACACAGCTTGAGGAACACCTGAGGGAGTAGCATGTAAGTCTGTTGGATGTCCTCAGAGTAATGACTTGATTTAAGGTCAATTAATGAGCAgttgtatatttgtattatcGTATTGTTTTGAC

Function

GO:

id name namespace
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122442 lncRNA upstream 13872 39445873 ~ 39493156 (+) True G90960
TU122418 lncRNA upstream 80842 39425296 ~ 39426186 (+) True G90948
TU122397 lncRNA upstream 128934 39377894 ~ 39378094 (+) True G90931
TU122395 lncRNA upstream 140087 39366631 ~ 39366941 (+) True G90929
TU122393 lncRNA upstream 140453 39366296 ~ 39366575 (+) True G90927
TU122491 lncRNA downstream 178561 39690479 ~ 39693930 (+) True G91002
TU122522 lncRNA downstream 191404 39703322 ~ 39703733 (+) True G91028
TU122529 lncRNA downstream 242700 39754618 ~ 39757562 (+) True G91034
TU122555 lncRNA downstream 331487 39843405 ~ 39863155 (+) True G91059
TU122546 lncRNA downstream 362313 39874231 ~ 39875734 (+) True G91050
XM_039808685.1 mRNA upstream 445 39498240 ~ 39506583 (+) True LOC120564047
XM_039808680.1 mRNA upstream 13090 39474362 ~ 39493938 (+) False LOC120564044
XM_039808678.1 mRNA upstream 13090 39474362 ~ 39493938 (+) False LOC120564044
XM_039808677.1 mRNA upstream 13090 39474363 ~ 39493938 (+) True LOC120564044
XM_039809162.1 mRNA upstream 95165 39404550 ~ 39411863 (+) True LOC120564312
XM_039808681.1 mRNA downstream 3217 39515135 ~ 39528042 (+) True LOC120564045
XM_039808682.1 mRNA downstream 3217 39515135 ~ 39528041 (+) False LOC120564045
XM_039808683.1 mRNA downstream 16334 39528252 ~ 39535940 (+) True LOC120564046
XM_039809247.1 mRNA downstream 60496 39572414 ~ 39597068 (+) True cfdp1
XM_039809248.1 mRNA downstream 60496 39572414 ~ 39597068 (+) False cfdp1
TU122034 other upstream 627126 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 826941 38658366 ~ 38680087 (+) False G90686
TU122022 other upstream 826941 38675575 ~ 38680087 (+) True G90686
TU121880 other upstream 1451464 38054509 ~ 38055564 (+) False G90583
XR_005640145.1 other upstream 1472334 38022377 ~ 38034694 (+) True wfdc1
unassigned_transcript_385 other downstream 241676 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122542 other downstream 359772 39871690 ~ 39874177 (+) True LOC120563436
TU122992 other downstream 1441690 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 1953786 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 1957325 41469243 ~ 41495311 (+) True vps9d1

Expression Profile