RNA id: TU122442


Basic Information

Item Value
RNA id TU122442
length 236
lncRNA type sense_over
GC content 0.48
exon number 2
gene id G90960
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 39445873 ~ 39493156 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtctgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122418 lncRNA upstream 19687 39425296 ~ 39426186 (+) True G90948
TU122397 lncRNA upstream 67779 39377894 ~ 39378094 (+) True G90931
TU122395 lncRNA upstream 78932 39366631 ~ 39366941 (+) True G90929
TU122393 lncRNA upstream 79298 39366296 ~ 39366575 (+) True G90927
TU122332 lncRNA upstream 251339 39193745 ~ 39194534 (+) True G90875
TU122431 lncRNA downstream 13872 39507028 ~ 39511918 (+) True G90957
TU122491 lncRNA downstream 197323 39690479 ~ 39693930 (+) True G91002
TU122522 lncRNA downstream 210166 39703322 ~ 39703733 (+) True G91028
TU122529 lncRNA downstream 261462 39754618 ~ 39757562 (+) True G91034
TU122555 lncRNA downstream 350249 39843405 ~ 39863155 (+) True G91059
XM_039809162.1 mRNA upstream 34010 39404550 ~ 39411863 (+) True LOC120564312
XM_039809314.1 mRNA upstream 157646 39260389 ~ 39288227 (+) True pard6a
XM_039808942.1 mRNA upstream 427088 38906023 ~ 39018785 (+) True LOC120564171
XM_039808685.1 mRNA downstream 5084 39498240 ~ 39506583 (+) True LOC120564047
XM_039808681.1 mRNA downstream 21979 39515135 ~ 39528042 (+) True LOC120564045
XM_039808682.1 mRNA downstream 21979 39515135 ~ 39528041 (+) False LOC120564045
XM_039808683.1 mRNA downstream 35096 39528252 ~ 39535940 (+) True LOC120564046
XM_039809247.1 mRNA downstream 79258 39572414 ~ 39597068 (+) True cfdp1
TU122034 other upstream 565971 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 765786 38658366 ~ 38680087 (+) False G90686
TU122022 other upstream 765786 38675575 ~ 38680087 (+) True G90686
TU121880 other upstream 1390309 38054509 ~ 38055564 (+) False G90583
XR_005640145.1 other upstream 1411179 38022377 ~ 38034694 (+) True wfdc1
unassigned_transcript_385 other downstream 260438 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122542 other downstream 378534 39871690 ~ 39874177 (+) True LOC120563436
TU122992 other downstream 1460452 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 1972548 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 1976087 41469243 ~ 41495311 (+) True vps9d1

Expression Profile