RNA id: XM_039807593.1


Basic Information

Item Value
RNA id XM_039807593.1
length 549
RNA type mRNA
GC content 0.58
exon number 2
gene id LOC120563436
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 39871690 ~ 39874177 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacacgcacgcacgcacgcacgcacaccctGCGCCTGGCAcatagagaaaaacagaaagtcaGGTAGAGCTGCCTGTGGAGTTGTCCTGTCCTCTCCGATTCCGTCGCCATGTCTCTGCCCACCGTGTCCCGGCTGTTCAGGAGCGCGCTCAGGACTCAGCTGGTCCCCGTGGCCAATGTGTCGGCCAAACCTGCCAAGCACCATATCTCTGCGGGGGAGCAGGCAATAGCCATGACTGCCCTGTTCGTGGCCATCTTGGGTCCCTCCGGCTGGATCCTGGCTCACCTGGAGGACTACAAGAAGAAGGagtagaagaggaggagaaggaggaggaagaagagggagaaCAGAGACTCATTCCGGCCCAGATGACGATGCAGATCAGCCGGCCCCTCTCCCTCCAGGCCTCTCCCTCGCCTCCATCTTTCTGCAGCTGATCAGACCAGACGCCAGTTGTTTCTGCACTTCTGACCCGTGTTCATGCACCTATCTGTGCACCTGTCAACCTCTTACCAATAAATACCTGTTCCCTATACAGA

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122555 lncRNA upstream 8556 39843405 ~ 39863155 (+) True G91059
TU122529 lncRNA upstream 114149 39754618 ~ 39757562 (+) True G91034
TU122522 lncRNA upstream 167978 39703322 ~ 39703733 (+) True G91028
TU122491 lncRNA upstream 177781 39690479 ~ 39693930 (+) True G91002
TU122431 lncRNA upstream 359793 39507028 ~ 39511918 (+) True G90957
TU122546 lncRNA downstream 54 39874231 ~ 39875734 (+) True G91050
TU122561 lncRNA downstream 3542 39877719 ~ 39878366 (+) True G91064
TU122563 lncRNA downstream 4307 39878484 ~ 39878728 (+) True G91066
XR_005640143.1 lncRNA downstream 5686 39879863 ~ 39883825 (+) True LOC120564773
TU122565 lncRNA downstream 16574 39890751 ~ 39892353 (+) True G91068
XM_039807997.1 mRNA upstream 184662 39604241 ~ 39687049 (+) True bcar1
XM_039807996.1 mRNA upstream 184662 39640761 ~ 39687049 (+) False bcar1
XM_039807999.1 mRNA upstream 184662 39640762 ~ 39687049 (+) False bcar1
XM_039808000.1 mRNA upstream 184662 39642222 ~ 39687049 (+) False bcar1
XM_039809247.1 mRNA upstream 274643 39572414 ~ 39597068 (+) True cfdp1
XM_039809297.1 mRNA downstream 70539 39944716 ~ 39963408 (+) True ric8a
XM_039809298.1 mRNA downstream 70539 39944716 ~ 39963408 (+) False ric8a
XM_039809299.1 mRNA downstream 99441 39973618 ~ 39974980 (+) True LOC120564391
XM_039809947.1 mRNA downstream 396346 40270523 ~ 40277195 (+) True dnajc24
XM_039809936.1 mRNA downstream 502123 40376300 ~ 40400951 (+) True LOC120564733
unassigned_transcript_385 other upstream 118046 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122034 other upstream 991809 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 1191624 38658366 ~ 38680087 (+) False G90686
TU122022 other upstream 1191624 38675575 ~ 38680087 (+) True G90686
TU121880 other upstream 1816147 38054509 ~ 38055564 (+) False G90583
TU122992 other downstream 1079431 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 1591527 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 1595066 41469243 ~ 41495311 (+) True vps9d1
XR_005640073.1 other downstream 1595066 41469243 ~ 41495311 (+) False vps9d1
XR_005640076.1 other downstream 1595066 41469243 ~ 41495311 (+) False vps9d1

Expression Profile