RNA id: TU122758


Basic Information

Item Value
RNA id TU122758
length 217
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G91229
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 40303571 ~ 40303787 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attaacaATACGAATAAGTTATAACAGTAAGGCTTTATTGGTTGGCTTTATTggtccttatgacctgtctctcttagttacctgttatagttacgctgttatagttctagactgccgggggacttccttcctttgacacactgagctgctctctcctctccctttctattactgttactattactattactattactatttgtgtgcagcccgtccc

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122744 lncRNA upstream 23706 40279222 ~ 40279865 (+) True G91218
TU122711 lncRNA upstream 106534 40195124 ~ 40197037 (+) True G91188
TU122708 lncRNA upstream 110281 40192792 ~ 40193290 (+) True G91186
TU122706 lncRNA upstream 111406 40191803 ~ 40192165 (+) True G91184
TU122704 lncRNA upstream 111836 40190730 ~ 40191735 (+) True G91182
TU122759 lncRNA downstream 77 40303864 ~ 40304320 (+) True G91230
TU122815 lncRNA downstream 176070 40479857 ~ 40492323 (+) False LOC120564712
TU122818 lncRNA downstream 191467 40495254 ~ 40495490 (+) False LOC120564712
TU122822 lncRNA downstream 199196 40502983 ~ 40503194 (+) True G91280
TU122826 lncRNA downstream 203270 40507057 ~ 40507294 (+) True G91284
XM_039809947.1 mRNA upstream 26376 40270523 ~ 40277195 (+) True dnajc24
XM_039809299.1 mRNA upstream 328591 39973618 ~ 39974980 (+) True LOC120564391
XM_039809297.1 mRNA upstream 340163 39944716 ~ 39963408 (+) True ric8a
XM_039809298.1 mRNA upstream 340163 39944716 ~ 39963408 (+) False ric8a
XM_039807593.1 mRNA upstream 429394 39871711 ~ 39874177 (+) False LOC120563436
XM_039809936.1 mRNA downstream 72513 40376300 ~ 40400951 (+) True LOC120564733
XM_039809937.1 mRNA downstream 72513 40376300 ~ 40400951 (+) False LOC120564733
XM_039809939.1 mRNA downstream 72513 40376300 ~ 40400951 (+) False LOC120564733
XM_039809938.1 mRNA downstream 72513 40376300 ~ 40400951 (+) False LOC120564733
XM_039810042.1 mRNA downstream 98321 40402108 ~ 40414480 (+) True LOC120564785
TU122542 other upstream 429394 39871690 ~ 39874177 (+) True LOC120563436
unassigned_transcript_385 other upstream 549906 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122034 other upstream 1423669 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 1623484 38658366 ~ 38680087 (+) False G90686
TU122992 other downstream 649821 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 1161917 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 1165456 41469243 ~ 41495311 (+) True vps9d1
XR_005640073.1 other downstream 1165456 41469243 ~ 41495311 (+) False vps9d1
XR_005640076.1 other downstream 1165456 41469243 ~ 41495311 (+) False vps9d1

Expression Profile