RNA id: TU122830


Basic Information

Item Value
RNA id TU122830
length 1423
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G91288
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 40518365 ~ 40519787 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTCTTTAATTTTTGTGCACAGCAGAAAAGTAAATTTACAGCCAAGGTAATTTCTATGCTTCAGCAGTTCACCCGAAACCTCTTTAATTACAAAGTATATTTATAtgagtacatacagtatgcatcCAGTATAGCTGCAAAGGTTAACACTGTGAGTCACATGATAGTGTAGTTGTGGGTGCTATcacaaacaaatgttttttttaaacaaaatataagTATATTACATTAACACAATGTACATTCATAAGAATGATAGGTTACAAGTTTGTCATTCTGTATATTTGGATAATTcttcaaatatatttttgttagtGAATATTccatacattaaaatacacatAGAAACAGAAGTGAGGGCGTTTGTTCTCTACTGGGGacaaattaaaattatttttggaagaaccaatcagatcaaaacTTCGTTCTTTTGGTCAAGTGTACATGATACTGAAGGTGAAGTAACAATTATGGAATGCACTATGGTTACACATCATGGTATCCATTTTTCTATAACAAATAATAGACATGTAATATGgaaaatggcaacaaaataGAGACAGAAATGCCAGTAATAGTGTAAGGTCAGGCCAAATATATTTCATTCatgaaagacaacaaaatgaatacaaattcAGGTTATGTAGAAGAAAGAGCCACTGAATGGGTGCTAACGTAAAGACCATTGCTACACGGCAAATGTGGCAGTAACacgttttttaaatttcaataGTCCTCCAGTATTAATCCACTGCACATTGTGCTGGTGCATCCCTAGTCCCATTGTATctcaaaatacatgtaaaactATACATTAAAACACATTCCAAAGGAAATATAACAATGAAATATACAATCAAATACACTTGCATGTAAAATAAAACTCACATTTCAACAACAGTCACATTTCAACAACCCCCAAAAGgttcacatactgtatgaaaaCAGTCAAGTACATAAGTTGTGGGTTTGTTGCAGGTCCTCAGATCACTCGGTtacgttgtaaccttggttctctgagtgaagagactatcTCTCCAGCTGTAGGCCGCCGATcagtcagatcgtttatagatctcgacatttcctaccgcacttgaaggcagcttcatttcacggagaaagagagaaagaaaggagacgGAGGGACGCTGCATTATGCCTCTGCACGTGCGTTGCAAGGTTAAGGTGGTTTGGTCCACTATAGGGGTGTCTCAAATCGGTGGGAAATATATTTACAGGTAAGAAGGATATATACATGTTTTTAGCCCCCTGAACGGTTATGttttacctcttttttttttctgggggaCAAATCTATGTCTTCCAAATAGAGGGgcaaaaaacccccccccccccaaaaaaaaccccccccaaccccccccccccccccccccccctcccccccccccctccccctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122828 lncRNA upstream 9017 40508732 ~ 40509348 (+) True G91286
TU122827 lncRNA upstream 9657 40508138 ~ 40508708 (+) True G91285
TU122826 lncRNA upstream 11071 40507057 ~ 40507294 (+) True G91284
TU122822 lncRNA upstream 15171 40502983 ~ 40503194 (+) True G91280
TU122818 lncRNA upstream 22875 40495254 ~ 40495490 (+) False LOC120564712
TU122835 lncRNA downstream 6956 40526743 ~ 40533217 (+) True G91292
TU122916 lncRNA downstream 183394 40703181 ~ 40704428 (+) False gins3
TU122919 lncRNA downstream 192957 40712744 ~ 40712954 (+) True G91358
TU122924 lncRNA downstream 207359 40727146 ~ 40727418 (+) True G91363
TU122947 lncRNA downstream 323291 40843078 ~ 40860888 (+) True G91383
XM_039809903.1 mRNA upstream 15538 40472848 ~ 40502827 (+) True LOC120564712
XM_039810042.1 mRNA upstream 103885 40402108 ~ 40414480 (+) True LOC120564785
XM_039809937.1 mRNA upstream 117414 40376300 ~ 40400951 (+) False LOC120564733
XM_039809846.1 mRNA downstream 29461 40549248 ~ 40557864 (+) True si:dkey-12e7.1
XM_039809848.1 mRNA downstream 29782 40549569 ~ 40557864 (+) False si:dkey-12e7.1
XM_039809849.1 mRNA downstream 31672 40551459 ~ 40557864 (+) False si:dkey-12e7.1
XM_039808792.1 mRNA downstream 39504 40559291 ~ 40586148 (+) True anpepa
XM_039808907.1 mRNA downstream 93729 40613516 ~ 40633735 (+) True ldhd
TU122542 other upstream 644188 39871690 ~ 39874177 (+) True LOC120563436
unassigned_transcript_385 other upstream 764700 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122034 other upstream 1638463 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 1838278 38658366 ~ 38680087 (+) False G90686
TU122992 other downstream 433821 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 945917 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 949456 41469243 ~ 41495311 (+) True vps9d1
XR_005640073.1 other downstream 949456 41469243 ~ 41495311 (+) False vps9d1
XR_005640076.1 other downstream 949456 41469243 ~ 41495311 (+) False vps9d1

Expression Profile