RNA id: XM_039809355.1


Basic Information

Item Value
RNA id XM_039809355.1
length 8022
RNA type mRNA
GC content 0.46
exon number 10
gene id smpd3
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 40867721 ~ 40950165 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAAAGTGGCGGTGCTGAAGAGACTCGTCTCCCCTCCGCTCGGTCAGCCAGCCAGTCGCTCTGTCGCTCCGCAGCCATCAGCTGGATTTCACCGCCTCACAGATGGTCTATTAGCGACGGAACGGAGGACAAATAAAAAGCATTCAGCAGCGTCTAGGCGTCACTGAAGCCCATGTGGGAGAGATTTCCAACAACTCACTTTCTCCAGGTCCCGAGGAAACGGTGACGTTTGATGGCCGCCCCCTCTCGAGATCGTTGGAGTCCTAGCAATCGTAGATCCATCATCAACGGAAAAGCTCTCACCATGGAAACCCCCTACCTCCAGACTGCGCTCCTTGACCCCCCCTGTAGAGGGTCCAATTGCTGAAGGAGGGGTAGCGATACTGAGACAAGCTTGTCtgtgaagataaaaaaaaacacacaaaaaacacacacaaaccatgtAGTGTACCTCTCTCCAAAGGAGGGGGGAGGGTCTTAGTTGAGtctgatttatattttgtactTATTTCTGTTGACGTAATCTCTGGAACAGATCTGTGTGGCATATGTGGTTGTGTACATACACTGTAAAAGCACCAGACGGATAATGTCCTGGCAGAAAATTAGCAGTAACTTTTCCGTTAACTTTACAAACATTTCTGTGAATCCAAAACCGGACAAATCTGTCgatttacagtatatacagtatatagattTACAGTATATCCTCTGTACCTTTTAacagacatttctgttaatctaaatacagaaaaacaccTGTGAAAAATCATTACAGAAAATTCCTTCATATTAACACGCTACATTAGCCCATATTTCTACGGACTTTTCTAAAAGAGTAGGCTAGCTTGCAAGGCGAGGCAAGCgtgacagagaggaagacaagaaagagagaaaaggataGAGATGGTCCTCCACACCGCCCCTTACTCCAGTGCCTGCCTGCACTTCCTGGACGGCTTGTCATGGAGCCTGGTGTTCCCCTGCTACTGGCTCCTGGACCGGCTCCTGGGCTCCTGCGTGGCCACCTCGCTGGAGAAGCGCCAACGCTCCCAGGACCCCTGCTCCTTCCTCACCCTGTGTGTCGTGATCTCAGCGCCCCTTTACCTGCTCCTTCTCCTCGCCTCGCTGCCCTTCGCCCTGCTGGGCTTCGTCATCTGGGCTCCCCTGCAGGCTGTCCGCCAGCCATACCTGTTCACCTACCGCAGACCAGACAAAGCGCAGGCCGAGCAGGGCCAGGCTGGCCCGGGGGGTGTTGGCATCGGGGAGTGGAGGGCGCAGGGCAGGAGCTTCTGTTTCTGCAGTGCCAACGTCTGCCTGCTGCCTGACTCCCTGGCCAGGTTCAACAACCTGTCAGACACCCACCGGAGAGCCCACGAGGTGGGGAAGAGGATCCGCAATGGGGCCAGCCGGCCTCAGATTAAAATCTACATCGACTCCCCCACCAACACTTCCATCAGTGCGTTATCCTTCAGCAGCCTTGCCACAGGTTTCCGCCGTACCTCCTCTCTGGACCAGCGCCCGGACcagacacacaccaccaacGGCCCAGCCGACCCCGAAGCCGAACCCCTCACCGAGTGCCCAATTCACCCCTCAGTTGCCACCGACTGCCCCGTTCACCCCCCCTCAGGAGACCAGGGCTCCTCCGAATGCCCTCTGCATCCAGACGGAGGAGACACGGCAGCAGACTGCCCCCTCCACCCTGCAGGGACTACCAGCAGCTCAGACTGTCCGGTTCACACCTCAGGGGAGGCTCCAGACTGCCCCATGCACTCCACAGGGGCTCAGAGTGGCCAGGGCCGTCCCGACTGCCCCATGCACTCCACAGGTTCTCAGAGTGGCCAGGGCCATCCCGACTGCCCCATGCATGGGGACGGGACGCAGACAAAACCATCGTCAGACTGCCCTATGCACACCTCAGGGGTTCAAATCAGCATCAGCGCCCCGGAGCCAGACCCACAGGAAGAGGAGGCCAGAACAGGGAACCATCAGTCTGGGGAGCAGGCAGGGGGAGACACGGGCAGCATGACCGCCTCCAGGGAGTCACTCGCCCGTTACCATGGCGGCGACACTGGCGTGGGGATATCCTCCAACAACACTCTCTCTCACGTCCCGCGCACGTCCATCTTCAAGCGCCCCGGGCGAAAACGCCGCCACGGAGACGAGACATTCGACCATGAGATCTCTGCCTTTTTCCCCGCCAACTTGGATTTCCTGGCTCTGCAGGAAGTGTTTGACCATGGGTCGACGACTAGACTGCGGCGCCAGTTGCATCGCTACTTCCCCTACGTGCTGAGCGATGTGGGCCGGTACGGCTGGAAAGGCTGCTGCTCGAGGTTCAAGTTCCTGAACAGTGGACTGATGCTGGCCAGCCGCTACCCGATCCTGGACGCACGGTTTGAGTGCTACCCCAACGGGAGGGGGGAGGACGCACTGGCAGCCAAGGGGGCGCTGTTTGCCAAGGTTCACGTGGGCACCTCCCATCAGGACCAAAGGGTTGTGGGATATCTCACGTGTACGCACCTCCACGCTATAGAAGGTGATGCATCTGTACGCTGTGAGCAGCTGGACCTGTTGCTCCAGTGGGGGGCTGAGTTTCGCCAATCCTCGTCCCAACCACGTGAAGGAGAGAAGGTGCTGGAAGACCTGGTGGCCTTTGATGTCATCCTGGGAGATCTCAACTTTGATAACTGCTCTTCAGAGGACAAGCTGGAGCAGCAGCATGCACTTTTTACTCAATACAAGGACCCATGTCGCCTGGGGCCAGGGGAGGACAAACCATGGGCTCTGGGTACTTTACTGGATCCCAGTGGCCTTTATGACGACGAGGTCAGTTCACCTGAAAGTTTACAAAaAGTGATGGAGAACgaggaggggaggaaggagTACCTGGTGTTTCCTCCAAGTAAGAGCCAGTGTCCCGCCAGCAGTCAGAAAGGGAGGAAGATCCCGCTGAAGGGCAACGGACGCCGGATCGACTACATGCTCTACAGCGACGAGGGCCTGCAGCCGGACTGGAAACTGgaTATCGAGGAGTTCAGCTTCGTCACCCAGTTGGCCGGCCTCACCGACCACCTGTCTGTGGCCATGCGATTGGCTGTTTCCACCGGGGAAGAGGAGCCTTAGATTGACCacctgagcttttttttttcttttcttttttttaaatactgccATGGAGGAGTGACAGACGACcaggaagaaaagaagagattAAGAGTTTGCAGATACGTTTCGGCTTGAGAAAGACTATAAATGCAGTTCTgcgctaggattgaagggagaGTGAAATAGACGGATGAATCACTTGGAGGAGCACTCAGTGGATGAATGGATAGAAAGAAGGTGGAGGAGAGTGGCAGCAGAGGAGTGATATGAAAGAGAAAGACTCTGGAGGGGAGAGATAAGCAGGGTAATTCAGTTTAGAAAGCCAGAAAGATATTCATCTTCCTGGGTAAACCtcccgcgcacacacacaaacacacacactaaatacagcacctaaaacacacaaacacgactGATCGACATTTTGACTGTTGAATATCTCTTGGCCTCTCCACTCATCTTCGCCGACACTCCCTTTTGAACTGAAGGTTTTTATTTACAGTGAATTGTTTTCATGTAGCCAATTTACACACACTTCTTTTATTGGATCTGTTTTAGCCGTAGAGTAAGTatgcttttttttatgattctgCCTTCAGGGACAGTCGGATCTTCTTTAGTGACAGAAAGAAAACCACCTAATTTAAGTGATGAGAGTGAAGCGTACAGCTACTGACTGGCCTTTACACTGACcatgtgtgtccttgtgtcgTGCTCCTTCCTGATTGGCTACTGGTCGTTCACCTTACTACTCCCACGTCAGTCCCAGGAACCCCaacaagtgtctttttttctaaaaaaaaaacaaacaaaacaaaactagtCTTTCTAAAGGAAGATTTTTTTATAGGGAGTTTAAATGCCTGTTTATTACTATATGGtatgtttctaaaaaaaaaaaaggtattgtaTAAAGGGACATGGAATTGGAGAAAGTGTTTTGTTAGATGCATTGAAATGCTTATAGCATGTTTTTCCGCCATGACTGGTTGAAAATTAGGCCAGACGTTTTTGGTGTAATCATGGGAACTGAGGCTTTGCGGATGCATGATGGGAAACGGTGTCAGTTTACAACATGAATTTAGCATCTTGATACACTTGCTTGCTTGATTCTGGCTGCTTGATGAGTCAAGAAGCATTTTTGCCCTGTAACACACACTTACTATATGCCAGTGTGACATTTGTGCATGTGAGACTCCACCCTGCTGATGACACTGAACACACGTGAGGGTGTGCACGGAAACATACTGAAGATTTACATAAAGCAGgcaaacatgtacacacatcaTGTACAGGGGGATTTCAGGTGATGTAACATACCCTCTGGCAGCCATATTGGAGGTCCCCCGAATGAAAACATGTGACCTGAGTAGATATTGTTAGCTTGTTAGCTAACAAACCAATGTAGCTATCTGGTTAGCAAGCCATCGCCGTCTTGTGAGCACGTCTGATTTGTGCACTAGATAACACACAGTATACAGCCCAGTTTTTGGTTAGAGCACAGCCAGTTGTCCAATGGATCACCCTGATGACAGCCATATTGTGATGCAACTGCAAAACCTCAGATTACAGAAACATTTGAAGACCTACACGCTGCACACACCCTGTACAATATGCCAAGTAAACGTAAACACATTTTATAATGTTCTAAAAGTCCCCAAGATTAAGACAACCCACCTACAAATAATGCACAATTCAAGTATTGCAAAGGCTAATGAATACACACAGCTTACCAGGTACACGAATACACGAAGCAGTGTAATACTACAATGCAACACAACTTAAGGTGTGTTCAGACTGAAAGCGAAAACAATTTTAGAAGCGGTGCGATTGCATTTAAAGTAATAGACACAAAAAATGAGGCTAGACGCAACTGCCCAAGTTAGATATTTTTCAACttgaaaagtgaaaatgttGCATTATTCCCAAGGCTTTATGACTCCAACtcataaacaaacatatataaGAACATTAAGATGATTAGAACAAAAAGAGAaggatatttaaaaaagaaaacacacacacagaaagaaccGGTGTTGAAGTCATATCTTGTATTCGTATATATACATTTACGGACTAAATTAGCTGTTTGtggcaaataaacacaaactgcGCACACAGTCCAGCAGTCAAATTCACACACAGTAAGCACAAGGCTAAAAAATGTGCTTTGCATTCAGTCTAAACACacctttagattagattagatagattagattagattagataatactttattcatcccacaatggggaaattcacttattacagcagcagtttttccacaataaaaacaaaccaacaaccaACCAAACAACAGACAGAATTCTGCTTCCCCCCCCCGTCTATATACACTGTATTACATTGTTGACAcactgcttctgctgctggTTGGACAACAATATACCTTACAGCAATGCAAAGATGACAACCTTTGGATTATTTTAACTCCTAATAATGCTATTAtataataacatttttttttctttttttggggggggggctgctgTTACAAGGGAATTTCCCAAGTGTGAGATAAATaaagtttatcttatcttattcaACTCCCAATCTGTACCAgacgcgttattatggatcccacgtaacttctaggcaagtcccgccctacgaagcagctcgattggttggggttaggcattgacctcgagtggttaagattaggatagctgattggtcaggggataggacctgaacaaatcaggtgACGTTACCTTGCGTACAATACGCCTGGACAATAGTaatgtgtgaatgctattgaagggcgggtctgtCCTAGAAGTTGCGtcggttccataataacgcgtaccagacccacacagaccatGGTGTCAAACAGGAGCTAGAACTTTGTAAAGAGCAGTGTCTAGTGAGTAACTGTTAAAAGGCATGTAGATACTAAAAGTGTCCTTGTGTCCCCTGTAGACCTGTTTGCCATGGTGCTGCCTGTGAACTATGCTATGTTGAGTGATAGGCCACTACCATTGCCTCAAACTTTAGAAAATAACATGGAAGCAGGTCTCAGCAGCAAGACTTGACACgagttagctaacattagccaccaaaAGCTACTAGTCatacccatagactgtaaaaaataatggacgtagcatccgtgacatcacccattggtttgtggactgctgttTTAAGCCTTGCTGGGTAGGATGGCCAAGCCAGTATTGTTTGCAATGGCACTGCGcttagctaaatgctaaagaggaaaagttgctgattttcaacccttctgtcCCTGACCCTAGAGTCATCCAGTAGAGATTTAACCTTGACACTGTGAAAAAGAGTTCActgctattttaatgtacacagggcgatggttagcattgctaagcctctgtgcTGATTGACAGGTCAGCATGAATCCAcgcccctaaagcatcccctgcttacCGCCACTTATTTAAATCAATGGGACCATATTAtgaaatgaacatcatgctatATTAAAGAAGACTTGAAAGTAGAGATTGTAttgaagtagggtcattttcccacagacttctatagaaacagactttttGGAGCCATTGAAATCGCTCCCTGCTGgtaattagatagaatgcagctttaaggtaCTTCCTCATTGGTTTTACTTTTCAGATCTGGAagctttgtccattatttttacagtctatggtcataccagaccaagtaaggCTGTTGCAGCACAAAACTCTGAATGAATTGAATTGAGCAAGGGTATATTTAATTCCTTAGGAATTGTAATTTCAATTTGTAACAGTAAAttgtgtcatttcttttttttaaatgtgcatatcCTTGCTTTAAAAGATGAGTTGGTTTTAGCAGTGGTGGCCTCCCTATCACTCAACACTATGTGCGCTAACGTGTTAGCAGGAATCTCCAGATCAATGATCTAATGTACTGGGAACACATGGATCATGTCTGTGTCCCTGTTGTTATCAGTCAACATGGGACAACTACCAAACCCTGCTGTATATTTTCTTTTAGTGGTGTGTGTGGAAAATCACTAATGTAGAAGCCTGTTTCTCTGAATAAAACATGCGTTCCAGTAACAGTTTAGGTTGTCAGATACTGTTTGATTTCCATGGTCTGCATGGTGAACAATGTTTACAACAGTTTTTTTGGCAGAAGTGTTTTAACACAAATGTGTGTACGTTTGTTCAGGCAGCTCATCGTGTTATATTCTTTCAATACAAATGTGCTAACTGACGTTTGAATGAaacgtgcgtgcatgtgtgcgtgcgtgttggTTGTTCTGTTATGTATGTTCAACTGTCATTTTTACATGCAGTATGAGTCCACAGGTCACCTGGCTGCTCTGACACTTTCTGATTATGACTAATATATCCTTCATATTACTAAGATTTGTATCTGTgctttttttcaattcaatctTCTTTCTTTAGGTTGAATCCTGTCATCTGCTTAGGTGAACTTCAAATGAGATCAAACCCTCACTATTGACTTGGTAAATAGTCATGTAAATACACTATAGGTCTATTATAGTTAAAgtttcagtgagaatctgctcttaaagtaaataaattaTGGTTTGGGCGGGAACAAAGTAGTAGCCGATGTAGAGGTTTATTAATAAGCGttagtttttttaattgtctgATTTTATTGCACAACACCTGAATACTGCCGAACATTTCATCATGGGACTTACAGTATGTAGTGCAACACCTTCGTGATGATACTAcacttttgtgttgtttttaacaaGTTGGAATGTGGAGGTAATTCATTTTATAATTTGGAGTTTATTTCTTTTGCTAATTGttctgtgtttgtatttttgcatattttttaaaaacaactgAAGAAAGTAGTGGGCAAAgaagctgattggttgattaaagCTGAAGGTGTAAAGGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122947 lncRNA upstream 6833 40843078 ~ 40860888 (+) True G91383
TU122924 lncRNA upstream 140303 40727146 ~ 40727418 (+) True G91363
TU122919 lncRNA upstream 154767 40712744 ~ 40712954 (+) True G91358
TU122916 lncRNA upstream 163293 40703181 ~ 40704428 (+) False gins3
TU122835 lncRNA upstream 334504 40526743 ~ 40533217 (+) True G91292
TU123017 lncRNA downstream 111261 41061426 ~ 41064286 (+) False exoc3l1
TU123045 lncRNA downstream 260339 41210504 ~ 41211463 (+) False G91451
TU123046 lncRNA downstream 260452 41210617 ~ 41211799 (+) True G91451
TU123061 lncRNA downstream 388805 41338970 ~ 41339360 (+) True G91465
TU123271 lncRNA downstream 614918 41565083 ~ 41566409 (+) True G91614
XM_039808954.1 mRNA upstream 37835 40819559 ~ 40829886 (+) True si:ch211-194m7.4
XM_039807842.1 mRNA upstream 65570 40730764 ~ 40802151 (+) False ndrg4
XM_039807574.1 mRNA downstream 3341 40953506 ~ 40955947 (+) True LOC120563418
XM_039809968.1 mRNA downstream 10688 40960853 ~ 41017023 (+) True LOC120564750
XM_039809970.1 mRNA downstream 10688 40960853 ~ 41017023 (+) False LOC120564750
XM_039809969.1 mRNA downstream 10688 40960853 ~ 41017023 (+) False LOC120564750
XM_039809972.1 mRNA downstream 10688 40960853 ~ 41017023 (+) False LOC120564750
TU122542 other upstream 993544 39871690 ~ 39874177 (+) True LOC120563436
unassigned_transcript_385 other upstream 1114056 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122034 other upstream 1987819 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 2187634 38658366 ~ 38680087 (+) False G90686
TU122992 other downstream 3443 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 515539 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 519078 41469243 ~ 41495311 (+) True vps9d1
XR_005640073.1 other downstream 519078 41469243 ~ 41495311 (+) False vps9d1
XR_005640076.1 other downstream 519078 41469243 ~ 41495311 (+) False vps9d1

Expression Profile