RNA id: XM_039807693.1


Basic Information

Item Value
RNA id XM_039807693.1
length 6433
RNA type mRNA
GC content 0.55
exon number 42
gene id nup205
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 38582874 ~ 38606852 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAAATGTTATCAAAGCGTGTTTATagaatttatactttttaaatttcaaatcgGCACCAGCCCAAAACCTCCTATCTAATTTTCAGACGAGTGTATCATGGCGGCGCAGATGGCGGTAAATTCGGGAGCCAGTCTGTGGGGGCCGCTGAAGGAGTTGTGGGAGACAGTGGACGGGGCCGTGTTGAGGAGACAGCCAGAGAGTGTCCACCTGCTGGACCTGCAGCTGAAGAAACACAAACCACACTTTCTCTCACTCTATAAGAACCCGCCAAAGAgtgcagagcagagagagaaggtGCGAAAAGCCAGCACAGAAGGCATCGCCATCCAAGGTCAGCAGGGGTCCCGCCTCCTTCCGGAGCAGCTTCTCTCAGAGGCCTTCATCCTCAGCGATTTGTTTGATATTGGGGAGTTAGCAGCGTTGGAGCTCCTGTTAGCAGGTGAGCAACAGCAGCCCCATTTTCCAGGTCTGACACGAGGTCTAGTAGCTGTGCTGCTCTACTGGGATGGAAAGCTTTGTTTGGCGAACTCCCTGCGCACACTCATCCAGTCACGCCATGGCAAGACCTTCACCCTGGACCTGAGTGGAGAGCTGGTGGCTTTGACAACTCGTTTTACAGATGAACTTATGAACCAGGGTCTGACCAAACGCCTCCTAACCTTGGTGTCAGAGATAAATGTGACACGTGAGTTTGAACGACTGCAGAAGGAGCGCGGCCTGGGCAACGAGAAGCACAGGAAAGAGGTCTCTGACCTCATTAAAGAAAGCCGACAGGCCCTGGCAGACAGCCTGTTTTCATGGACCTGCCAATCACCTTTGTCTAAAGATGACACCCTGGCTCTTATTGGCCACCTGGAGACAGTGACCGCTCAAGCTGATGGCTCATTGGACAGTGTGAACCTGGCTCTTGTCATGGCACTTCTCTACTGCTTGGATGTCAGCTTTGTAGAACAGGGGACAGAAGATAGAGAAGATCTGATCCAGGCACTGCCAATGCTGACTGAGAGGCAGTATGTGTCTGCAGTGCACAGCCGTCTGATGGACGGCCAGCCGTGGAAGCTTCCAGGTCTGCAGGCTGTGTGTCGACTGGCCTGGGCTCTGTCTCTGAGGGTCCTTTCTCAGCTACCACAGGGATGTGcCCTTGTTGAATTCACTGAGGCAGACGAGGCTCTGGCTGACCAGGCTCTACTGGGAGATGTCTTCCTGTTTATGAAGGAGGGCATCCTGGGATGTGAGAGTTTTGCCCAGGAAGAGTTTTACATCCGCCGCCTCCATTCACTCATCACAGACTTCCTGGCCCTCATGCCAATGAAGGTGAAACAGCTTCGTAACCGCGCTGATGAGGATGCCCGTCTGGTGCACATGTCCCTACAGATGGACAGCGAGCTTCCATCATCGTTACGCAAGGACTTAGACCACCTCATGATCCTCATCGGGGAGTTTTACAGTAAAGACTCATTTGGGCTGGAGTTGGGTCTGGAGTTCTGGTGTCCCACAGAGTCTCTCCAACACACCTCCCTGCAGGGATCCTACCTGGGAATGGCACTTCAAAGGCCTCCACATAAACAGGTGGTTTTGTCCAAGTTTGTGCGCCAGATGGGAGACCTCCTGCCCGCCACCCTCTATATCCCCTATCTCCGAATGCTGAAAGGGCTTGCCAATGGTCCTCAGTGTGCCCACTACTCCTTCAGCCTGCTTAAAACCAACGGAGCTACACACAGTGACAACATTCAGGGAGTTTCAGGCAGCCCGGTGTCTTGGGAACATTTTTTTCACTCCCTTATGCTCTACCACGAGAACCTGCGACGAGACTTTCCAAATCCAGATGCAGCACACTACCGCCACCCGCCACTAAGGGGCATCACCCAAAGAGAGCTGGACGGACTCACCTCATTTTTGCAGCTGCTCACAACCATCATTACATGGaGTGAAAATGCTCGACTGGCGTTGTGTGAGCATCCCCAGTGGACCCCAGTTGTAGTGATGTTAGGGTTGCTACAGTGCAGCATTCCTCCCATCCTAAAGGCTGAGCTCCTGCACTGCCTGGCAGCCTTTGGGAAGTCACCAGAGATCGCTGCTTCACTCTGGCAGTCACTGGAATATACACAGATCCTTCAGACAGTGCGAGCCCCGGGACAGAGGCAGGCAGCTGGGATTGAGGTGGAGCTGAGTGAGATCGAGTCAAGCTGCGAGGAGTATCCCCTGACGCGAGGCTTCTGTCATCTGATCAGCACACTGGTCGAGAGCAGCCTGCCCATTAATTTAGGGGCGGGGCTACGCGTACCAGGCTTTCAGCCTTACCTGAACTTCTTGCGTGACTCGGTGTTCCTCCCCTTTCCCACCAGAGCATATCGCCGTCCAGCTGAGAAGTGGGAGGTTGCTGATGCTGTCCTGGAGGTGTTCCACAAGCTGCTGCGGGACTACGAGCCCCAGCCGTCCGACTTTGTCCAGGAGATGGTGGAGCTGCAGGGGGAGCAGGTCACCGCCCACAAGCCCCCAGGCCACAGCATCATGTTCCACCTGCTCAACGACTCGCCAATGCTGGCGCTCTGCCTCAGCCTGCTGGAGGAGGGTGTACGCCAGCTGGACACCTATGCACTCTTCCCTGGTAAGAAGCTCTTGGAGTCGGCGGTGCTGCACTGCCTGTGCCTGCTGGACTTGGCTCTGCAGAAGGAGGTGGTGTTCATGGACCTCCTCAGGGAGAGCCAGGCCTCCATGCTGGTTTCCCCCTTGGAGCAGCTCCTGCAGGGGGTCAGTCCTCAAACTCGAAGGGCAGATCACATTGTCAATATTGCCAGGTATCTGTACCACAGCAGCTCTAACCCAGAGGCTGCCTTCCAGAGTGCCAAGATCCTGCGTCGTATCGCCAACTACCCCAACATTCAGACTAGGCTGGTGGGAGATTTTACACACGACCAGTCTGTGAGTGACAAGCTTATGGCAGGCTTTGTGGAGTGTCTGGACAGTGAAGAGGCTGAGGAGGGAACAGAAAATGGAGATGACTCTCACCCACAAAAGAATGTTGCAAGAATCCGGCATGAAACCCAGATCCATATGCTGAACCTGCTCATCACCTCCTTGGAGCTGAAGACGCCAAATCTAGCCCTGTACCTTTTGGGCTATGAAGTAAAGAAGCCTGTGTCCTCCACCAACCTCCAGGACCCAGGTGTGTTGGGATGTCCACGGAGCTGCCTGCACGCCATACTGAGTCTGCTGCAGAGAGGCACCGAGAAGAGATCAGGACCGGTACTCACACAGCAGGCCCCACACCTGGCTGAGCTCTGCTACCAGGTGATCTACCAGCTGTGTGCCTGCCCAGATACATCAGGACCCACCATGCGCTATTTGAGGACCAGCCAGGACTTCCTGTTCTCTCACCTGCAGCACCTACCCTTCATCCTGCCTAGTAACCAGATAGCTGCCCTCTCCCAGATGTCTTGGCTCATGAAAACAGCTGCCATTGAGCTGAGGGTGACCTCACTGAACCGCCAGCGTTCACATACACAACGCCTTGTCAGCCTCCTGTTGGATGACCAGCCACACACTCAACATACAGCTGACGGGGAATCGGGAATGGAGGAAGAAACCAGATCGGTCAGCGGGTTCCTGCATTTTGACACCGTTTCTAAAGTGCGCAGGAAGTTGCTGAGTGTGCTGGACGCCATCGATTTCAGTCAGGATATGCctgagctgctgcagctggacTTCTTTGAGCGTGCTCAGATAGAGCAGGTGATCACCAACTGTGAGCATGTCAATGAGCAAGGACACACTGTGTGCAACGTTAAGttgttGCATAGAGTGCTTGTCGCTGAGGTGAATGCACTGCAGGGAATGGCAGCCATTGGACAGAGGCCCCTGTTAATGGAGGAGGTGAACTCCATCCTGCAGCAGGTGGTGGAACGCAACCGCGTCCGTAGGAGTTTGAGTGCAAAGCGACATGCGCTGCGGTCCTGGAGGAGCCTGGTCGAGACGCTGCTGACCACCTGCCCTGCTGATCTCATACCTGCTGATGACAGGCAGCTCATCATCAGAGACCTGCTGCTCGACCTGCACGATAAGGTGTTATCTGAGGATGCAGCAGGAGAACTGATGCCCATTGTTGCTGGGGCAGTCTTCACTCTAACAGCCCACCTCAGCCAATCAGTCCTGtctgagcagcagcagggggcgggATTAGAAGCATCCTCTGGCTTTGCCTCCATTGCCAACTCCGCCCTGCACCTGATTCTCCGCAAGCTGCTGGACTTCATCCTTTGCACTGGGGGTGGATACCAGCGTCTGCGTGCTCACTTGTATGGCTCCCTGCTGTACTACCTTCAGATTGCCCAGAAACCTGAAGAACCAGACACTCTGCAGACAGGGAAGGCAATGTGGGAACGTCTCACAGCCCCCGAAGATGGTTTCTCCAAACTGCAGAGAGAGAATCTCGCCATCATTGAGAGCTATGGCAGAGCTCTTATGGAGGTGGTGTGTCGGGACGCCTGTGATGGCCATGAAATCAGCAGGaTGTTGGCTCTGGCGGTGCTGGACCGGATCTTGTCCATAGACCGTCAGAATCAGTGGCTGGTTTACTTATGCAACAGTGGCTACCTGCGGTCGCTAGTGGAGAGCCTGAGACAGGATGATGCCGCCCTGCAGAGCCTGCTCACACCTCAGCCACCCCTCCTCAAACCACTCTACATCTATGAGAGCAAGATGgCCCTGCTGACTCGTGTGGCTAAGACGGGTCAGGGAGCTGTGGAGCTGCTGCGCTGTGGGCTGGTGGCACAGCTGATAGAGTGCCAGGTGTTTGACATGGTACCTGACAGCGATGCACACAGGGTGATGCGGGACCCATCCGGCTTCATCCCCAGCCCTATGGACCGCTACAGGCAGATTCTCTTACCGACCCTAAGGCTCTTTCAGGTGATCCTGACCTCTACCACCATGAACCACCAGCAGGGCGCGGCACAGGTTCTCCAGTGGCTGATAGTGCATGCCGACACCATTCAGTCCCTGTTGCGCTGTCAGGAGCTCAGTATGGGAGCCTTGCAGGAGCTCTCTTTGCTCACTGGCATCATCAGTAAGACGGCTCTGCCAGGGGCCCTTGAGACGGGTGGGGAGGTCAACAGTGCGGCTATAATGGAGTTCCAGGGTCACATCAACAGATTCCAGCGCCTCTGTCTGTCCTTGCTCGGCCGTCTGGCAGGGAGCGAACAGGAGAGGTTGCTGAAGCAGGCTGAGGTTGCTGCACCTGGAGACTCAGCAGAAAGACGAGAGGAGATGGAGGTGTCTATGCAGCAGGTGCGTGCTAACATCATGGAGTACTGCCAAACGTTGCTGCTGCAGAGCTCAGCCCAGGCCCAGTTCAGCATCTGCCTCTTCAGCCCGTCAGGCAGCGAGCCAGCTGGCAGGGACGGAGGACGCTCAGatctgTCATCCACTCTGCCATCAATGGCTTACTCCCGGGCCCCCAGCCTGGGTCTGGTCCTGTACCTGCTGAAGAACAGCGCTGCAGATTTCTTCCGCTTCCACCAGAGTCACAGACAAAGCTTGGGCAAGCTGCAGAGCCTGGATCAGCTGCCTCCTGAGGAGCTCAAGGAGTTGTGCCAAGGCCTGGTGTCAGGCCCAGGAGGGGTGGAGAAAATCTCATCAGTCCAGAGGAGCTTGCTGGCCAAGAGACGACTGGTACAGCTTATCAACAACCGAGCCAAGCTGCTGGCCCTGTGCTCCTACGTTATCGagacatgtttgtttgtgttgtggcgcCACCTGGAGTACTACCTGTTGCATTGTACTCCCACCGACCCCAAGGACTCCCTGATGCCTGGAGCCAGTCTGTATAGATCTCGCCTCACAGACGACTCGTTTGGCGGGTTGCAGGCAAGTGGAGGGCGTTGCCTCGGTCTATCCCGAGTCAGCCAGCAAGACCTAGACCTGCTGAAGAGTGACATGGCTGCAGGTTTCGGAGAGGCCCTGCAGAGGAAGCTGCTGGAGGTGGAGGGTTTGTACAGCCAGGTCCGCTCCCGCTACACCTTCATCCAGGCCCTGGTTCGCAGGATCCGTGGCCTGCTCCGACAGCCCAAaagctgagacacacacacacacaaatacaaagacTGTCCAAGACCCAAAATCTCAAGTTTGATATTGACTCAAACCGCCTGCCAAGCGACAGTGGAAAAACTACCAAGAATTCAACTTTCTGATCTGTTGCAGCTCCTCTCTTGACTATTGTGTGACGTTAACACCATCATGGTGGTGCATTCTGAGTGACCCCATACTAATTATGTTGAGTAGCACTGTGCAAGGAGCGTTTCTCAAAGAAGCGAGGAAAAGTAACTTGCAGAATACAAATTTGTACTCGTTAAGAGAATTTGATATTCATTctttggtctgatttctctttttttctttatgaaAATAAACGTTTTCTAAATCTGTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122006 lncRNA upstream 3845 38575361 ~ 38579029 (+) True G90674
TU121979 lncRNA upstream 24723 38556657 ~ 38558151 (+) False G90653
TU121980 lncRNA upstream 24723 38556657 ~ 38558151 (+) True G90653
TU121985 lncRNA upstream 27162 38552327 ~ 38555712 (+) True G90655
TU121956 lncRNA upstream 128558 38452802 ~ 38454316 (+) True G90635
TU122018 lncRNA downstream 9860 38616712 ~ 38622899 (+) True G90682
TU122021 lncRNA downstream 47168 38654020 ~ 38665353 (+) True G90685
TU122030 lncRNA downstream 80632 38687484 ~ 38692021 (+) True G90692
TU122049 lncRNA downstream 134062 38740914 ~ 38743012 (+) True G90703
TU122055 lncRNA downstream 182056 38788908 ~ 38789350 (+) True G90706
XM_039810041.1 mRNA upstream 12250 38563908 ~ 38570624 (+) True dennd11
XM_039808806.1 mRNA upstream 35376 38529277 ~ 38547498 (+) False bcl2l13
XM_039808805.1 mRNA upstream 35376 38529282 ~ 38547498 (+) True bcl2l13
XM_039808873.1 mRNA upstream 66271 38505931 ~ 38516603 (+) True slc25a18
XM_039810058.1 mRNA downstream 118655 38725507 ~ 38740297 (+) False zgc:110789
XM_039810057.1 mRNA downstream 121611 38728463 ~ 38740297 (+) True zgc:110789
XM_039809898.1 mRNA downstream 138036 38744888 ~ 38768574 (+) True LOC120564709
XM_039809899.1 mRNA downstream 146959 38753811 ~ 38768574 (+) False LOC120564709
XM_039808941.1 mRNA downstream 290702 38897554 ~ 39018785 (+) False LOC120564171
TU121880 other upstream 527310 38054509 ~ 38055564 (+) False G90583
XR_005640145.1 other upstream 548180 38022377 ~ 38034694 (+) True wfdc1
unassigned_transcript_383 other upstream 2119306 36463486 ~ 36463568 (+) True trnal-cag_1
TU121355 other upstream 2797458 35784694 ~ 35785416 (+) True G90142
unassigned_transcript_382 other upstream 3371943 35210860 ~ 35210931 (+) True trnaw-cca_9
TU122023 other downstream 51514 38658366 ~ 38680087 (+) False G90686
TU122022 other downstream 68723 38675575 ~ 38680087 (+) True G90686
TU122034 other downstream 270198 38877050 ~ 38879902 (+) True G90693
unassigned_transcript_385 other downstream 1146742 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122542 other downstream 1264838 39871690 ~ 39874177 (+) True LOC120563436

Expression Profile