RNA id: XM_039807997.1


Basic Information

Item Value
RNA id XM_039807997.1
length 4660
RNA type mRNA
GC content 0.57
exon number 8
gene id bcar1
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 39604241 ~ 39687049 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTTTAAGGCTGGATCTGGATCCGGATCATCCCTGGGGAGGCACGACAGCAGCGCACAGCGGCAGAGGCGGTTTACTCCCGCCGTTCACTCCCGCTACAGACCTGGCAACTTAACGGCGGAAGTCGCTTGACCTCCCGAATTATAGCTACGTCGTTAACGAGCTTTTATCGGAGCATTTCTGAAGAGGTCCGTGAAGGAATCCGTGACTGGAGCGAGGAGCGGCGGAGGGGAGAGGGAAGAAGGCGGGGGGGACGGAGGAGAGTCATCCCCGGCTCTGCTGGACATTCATGCGGCCACACTGCCGCTGGCTGCCGCAAAAACCTGCTTCTGCTGCGGACACATTTTGACCCGACTACCCTCTACAGCCGGATGTCTGCCAGTCTTATGGAGTGCACCAAGGAACGGAGGAAGGAGGACTGACACTTGGGGAGCCGTGAAGGAAGAAAGCCTCGTCCTGTTGGAAAAGTAGCATCCGGAGAAAAAGCCGAGCACTGCGCGTTTTAAAGCCGAGCAGCCGAGGAGAGTGACAGCACCGGCAAGATGTCTGTCCCTAACGTGCTGGCCAAGGCGCTGTACGACAATGTGGCCGAGTCCCCGGATGAGCTGTCCTTCCGTAAGGGGGACATCATGACGGTGTTGGAGCGGGACACGCAGGGTTTGGATGGCTGGTGGCTGTGCTCGCTCCATGGTCGCCAAGGCATCGTCCCCGGCAACCGCCTCAAGATCCTGGTCGGCATGTACGAcagcaagcagcagcagcaggccacGCCTTCCACGCCAGAGCCAGCCACTTCCTGTCCCTCCTCCCAGCGACCCCTCCACCCTCTGAGCGCCTACGCCCAACCATCCCCCTCTCCGTCGTCGGCCGCCAGCGCTACTTCGTCCTCCGGGTATCCCAACAAGCCCCTCCATTCGGCACAGTACACGCCCATGCATCCGGCCTACTCCAGCCCCAGCCCCGCACAGCCCAACCCTGACTCCATCTACATGATGCCCCCCTCCCACGGCCCCAAACCCAGTCCACAGAGTCTGTACCGCTCAAGCGGACTCCCTCCAGGACCCCCCAGCAAGGCCCCAGCAGTGGGCAAGgTGGTAGTTCCTACCCGGGTGGGACAGGTGTACGTGTACGACACGACCAAACCAGACCAGGACGAGTACGACGTCCCGCCCAGACATCAGCCTCCCACCCAGCACGACATTTACGACGTGCCGCCCACCCGCCAGCAGTACAACACacagGTGTATGACACTCCTCCCATGGTGATGAAGGGCCCCCCCAGTGGTAGAGATATATATGACACGCCAGCAAGCACAGACAAGAACACACAGCAGACGgtcTACGACTTCCCGCCGTCTGTCAGTAAAGACGTCCCTGAtgctcagccaatcagagaagaGACCTACGACGTGCCGCCCCACTTTGCCAAACTCAAGCCGGCCCCCGTCCCGGCGGGCCTCAATGACGACGACGACGAGCCGCCCATCCCCGAGGATGTGTATGACGTGCCGCCCCCCATCCTGACTGACAAGCATTACCGCGGCAACAGGGGCGGAGTCAGCCAGGCCCCCCAGGAGATCTACGACATCCCAGCCAGCCTGCGGACCGGGGGGCACCCCACCGCCCACGACGTCTACGACTTCCCCCGGGAGcgagaggagaaaggaggagacAGGGGGGACCACTACATCTACGATGTCCCACCACAGGTTGTGCGGGACGCCCAGTCCACCAGCGAGGACCTCACCTTGTCCTTCAAGCGGCTGTCTGCCTCGAGCACAGGAAGCACCCGGAGCAACCACTCGGCTTCCTCCTTAGACATGGTCCCTGTCCGcgacacctcctcctcctcctcctccacccttCCTGCGCCGGGGAAGCCCCTGGTCCTGGACTTGGAGCAGGCCATGGAGCGCCTGTCTCGCCTCCAGCAAGCCGTTGAGTCCAGCGTGTCCCTCATGATGTCCTTCATCACAGGTAACTGGAGAAGCCCTGCTCACCTGGAAGGGAACCTCCCGGCCATTCATCAAGCAGCTGACCGGGTGCGCTCCACTGTTCGGGACTTCCTGGAATTTGCGCGGGGCGCTGTGGCCAACTCGGCCCAGGCCACAGACCGCTCTCTACAGGCCAAGCTAGGCCGCCAGGTGGGCAAGATGGAGGAGGTCTTCCAGACTTTGATTCTAAACAGTCAGGGTTTAGACGCCGTTTCCTGGTCGCACGCCGCGCTCACGGCGCCGCCGGCGGGAGGGGACGACTTAGACCGGCTGATCATGACGGCGCGCGGCATCCCCGACGACGCCAAGCAGCTCGCCTCCTTCCTCCACGGCAACGCCTCGCTGCTCTTCAAACGGacccggcagcagcagcagctgccccTTCCTCCGATCCCGGGGGATGTCAGCGGTCACGTGACAGGATCAGGAAGTGGGAGCTATCAGGGAGGGGAGAGGGTTCACATTCAGTCACGGCCCCTCCCCTCTCCGCCAAAGTTTACAgctgcagaggaagaggaaggcgTAGACAGGCCGTATGGGAGCACAGAGGAAGGCTGGATGGAGGACTACGACTACGTACatctgcagGGAAAAGAAGAGTTTGAGAAGAACCAAAAACAGCTGCTGGAGAAGGGCAACATCACCAGACACAAGACACAACTGGAACATCAACAGGTACCTATTAAACAGTTTGAGCGGCTGGAGCAGGAAGTCAGCCGGCCAATCAACAACGACATGACGGGCTGGGTCCCCGTGGCCATCCAGCATGCCCCCAACGGCTCCGGAGGCCCCGCTTCCTCCAAGCTGTGCCACGGTGACCGCCAGCTGCTCCTCTTCTACCAGGAGCAGTGCGAGCAGAACGTCACCACGGTGACCAACGCCATCGACGCCTTCTTCACCGCCGTCAGCTCCAACCAGCCGCCCAAGATCTTCGTGGCGCACAGCAAGTTCGTCATCCTCAGCGCGCACAAGCTGGTGTTCATCGGCGACACGCTGTCACGCCAGGCCAAGTCGCCGGAGGTACGGGGCCGCGTGGCGCAGAGCAGCAACGCGCTCTGCGAGAAACTCAAAGACATCGTGATCAGCACCAAGACGGCGGCGTTGCAGTACCCCTCCCCCGGCGCGGCCCGGGACATGACTGAGAGGGTCAGGGAGCTGGCGGGCTGCACGCAGCACTTCAGGATGGTGCTGGGACAGCTGCTGGTGATGTAGGGAGGGTGGGGaggcgggggtgggggggaaccAAACAGTGACACAAACTGAGATGTCCCGggaacaccatggatgtatcaacaaaacaaataaaataaaactggatACAGCGTTCGAGGCGGGGCCCcgttcattcctatgagagtCGCTCAGTGGAGCATGAAGCCAAAAAAGTCCCCCTCCCGGGCCTAAAAGGACCCGGATGGTCCTCACTGTGCGGCCCACAGAGCAGGCGCACTGCCGACCTCTGCTGGCCGAGCCGGCTACTTCCGGTTTAGCGCTAATTTGAATGgcgattaaatgatttaatcgtGCGGCTTTCCCAAATGTAATCGGGGccgaatggatcaaattcttATAGTGAAATGAGTCATTTCGCGGGGGTTGTGTCTCTCCACTGATTTACAAACGTCTCTGTCTCCGTGTAAGTCCATGGGGGGGAAAATGTCTTTTTGGGCTCCATGGCATCACGTGTCGACACAGAAGTTTCAATTCCAGCGTTTGCCTGCTATGTCAAATTGGCTTCAATGCCCGGCGCACATTCTGGGGGCCTGAGGAGCACGGGGCAGTACGTCCTGCCTGTAAGAAGGGATGGGCGACCCTGTGCACCCCTGCAGCTCGGCGGGGGGGGGGACCTGGAGCCCCGTGGAGCGCTGagtgctgcaggaaaccctTTCCCCCTATCATCCATCCTGTGCTCCCTCCCTACCTCACCTTCCACCGGGACCATCCTTCCCTTATCCCCCCTTCCTCTGCGCGCTTTTTATTCTCGACAAAACTAAAAGGAACATTTTATCTTCAGTGGGCTGGGCCAATGGTTGTAAAATAATCATTGTAAATATTTAAGTTACCTGAAAACCGGAAAGAAAAAAGACTTCcagtatataaatataaatatatgtttgttttttttgagagagaaagaaaaggtgaAAACGTGAGTGTAGTTTTTAGACATTATCaataattgttattattattattattattattattattattattgctatacCGTATAATTCTGGCTCTGATTCTTGATCCGTGTATCATTATTGTTATGGATGTGTAAATTCCAGATGATATGTATGACTGTATGTTGTTGTACATCTATGCTCTTCTCCATCCCTGACAAAAGGCACACTTTCCAAAAAGCACTGGAGCACACAGCCATCTTTAAACCTCACCGGATGACAGGCCGACTCTTCCTCATGCTGCCATGTTGCCTGTGTGTTGGAGCAGTATGTTACCGCCAATGAGTTCAATCCACCAGTGCAGGCAACAAGAGACGTCCGTGCATAACTGTACAGTTATTAAAGATGATTCAGTGCCCTCTCAGTGGCTTTTTTGGGAAAACTATATGTAGGTTGTTTTGTAAGACGCATGTATTAGAGAAAAGGAGTGTAAAAGGTTAAACACTAGAAATGAAATTAAaccttctttcttcttttctctga

Function

GO: NA

KEGG:

id description
K05726 BCAR1, CAS; breast cancer anti-estrogen resistance 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122431 lncRNA upstream 92323 39507028 ~ 39511918 (+) True G90957
TU122442 lncRNA upstream 111085 39445873 ~ 39493156 (+) True G90960
TU122418 lncRNA upstream 178055 39425296 ~ 39426186 (+) True G90948
TU122397 lncRNA upstream 226147 39377894 ~ 39378094 (+) True G90931
TU122395 lncRNA upstream 237300 39366631 ~ 39366941 (+) True G90929
TU122491 lncRNA downstream 3430 39690479 ~ 39693930 (+) True G91002
TU122522 lncRNA downstream 16273 39703322 ~ 39703733 (+) True G91028
TU122529 lncRNA downstream 67569 39754618 ~ 39757562 (+) True G91034
TU122555 lncRNA downstream 156356 39843405 ~ 39863155 (+) True G91059
TU122546 lncRNA downstream 187182 39874231 ~ 39875734 (+) True G91050
XM_039809247.1 mRNA upstream 7173 39572414 ~ 39597068 (+) True cfdp1
XM_039809248.1 mRNA upstream 7173 39572414 ~ 39597068 (+) False cfdp1
XM_039808683.1 mRNA upstream 68301 39528252 ~ 39535940 (+) True LOC120564046
XM_039808681.1 mRNA upstream 76199 39515135 ~ 39528042 (+) True LOC120564045
XM_039808682.1 mRNA upstream 76200 39515135 ~ 39528041 (+) False LOC120564045
XM_039807593.1 mRNA downstream 184662 39871711 ~ 39874177 (+) False LOC120563436
XM_039809297.1 mRNA downstream 257667 39944716 ~ 39963408 (+) True ric8a
XM_039809298.1 mRNA downstream 257667 39944716 ~ 39963408 (+) False ric8a
XM_039809299.1 mRNA downstream 286569 39973618 ~ 39974980 (+) True LOC120564391
XM_039809947.1 mRNA downstream 583474 40270523 ~ 40277195 (+) True dnajc24
TU122034 other upstream 724339 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 924154 38658366 ~ 38680087 (+) False G90686
TU122022 other upstream 924154 38675575 ~ 38680087 (+) True G90686
TU121880 other upstream 1548677 38054509 ~ 38055564 (+) False G90583
XR_005640145.1 other upstream 1569547 38022377 ~ 38034694 (+) True wfdc1
unassigned_transcript_385 other downstream 66545 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122542 other downstream 184641 39871690 ~ 39874177 (+) True LOC120563436
TU122992 other downstream 1266559 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 1778655 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 1782194 41469243 ~ 41495311 (+) True vps9d1

Expression Profile