RNA id: XM_039808360.1


Basic Information

Item Value
RNA id XM_039808360.1
length 669
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120563880
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 38360455 ~ 38361847 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttatttaccatgCTGTTAATTTCCTAAAAAGGTATTTGATTGGCTTAGAATGATAAAAATCGTTCCACTCTTTCCAATTACACTGATTAATGGCATGTCTATTTAAGTGGTGGTTTGAATGTTGGTTTTAATGTATCAAACATGGAATCAAAACCAAGAAGGGCGAGAAAGCCCAACTGGACAGAGGAACAGTGTTTACTGTTAGCCCAGTTAGTGGAGGAACACAAGGCCATTCTTAAAGGAAAATTCGGGCCGGGTGTCACAGCACGGGACAAGAAGCAGACATGGGAGCGTATAGCACAAACTATTAACGGTTCATTCCCCCTGCTTGTGCGCACCAATGAAGACTGTGAGAAACGCTGGTATGTGTTGCAATCAAAAGCCAGAGAGGAAATTGCAGCACACAAGCGGGAGTCTTCACGCACAGCACAGAGCCTTCAGCAGAGGAATGGGGACCGTCGACATCGCAGGTGGGCGACCCTCAGCCCGAAGCGCCTCATTCCCTGCCTTCTGCTGCCACCGCAGCTGCTCCAACACCATCCCTAGTAGACAAAAAactggagatggagatggatgtCCTAAAGCAGCAGAAAATAGTACTCCATCTACAGGAGGAGTACTACAAACTAAAAATTGAGCTActcaaaaataaaactaataacaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640022.1 lncRNA upstream 56810 38302302 ~ 38303645 (+) True LOC120563884
TU121949 lncRNA upstream 56836 38302296 ~ 38303619 (+) False LOC120563884
TU121945 lncRNA upstream 88283 38269426 ~ 38272172 (+) True G90624
XR_005640021.1 lncRNA upstream 227273 38131887 ~ 38133182 (+) True LOC120563874
TU121956 lncRNA downstream 91275 38452802 ~ 38454316 (+) True G90635
TU121985 lncRNA downstream 190800 38552327 ~ 38555712 (+) True G90655
TU121979 lncRNA downstream 195130 38556657 ~ 38558151 (+) False G90653
TU121980 lncRNA downstream 195130 38556657 ~ 38558151 (+) True G90653
TU122006 lncRNA downstream 213834 38575361 ~ 38579029 (+) True G90674
XM_039808351.1 mRNA upstream 72570 38272835 ~ 38287885 (+) True LOC120563875
XM_039808361.1 mRNA upstream 114839 38210958 ~ 38245616 (+) True LOC120563882
XM_039808350.1 mRNA upstream 252368 38100538 ~ 38108087 (+) True ndufa9a
XM_039809303.1 mRNA upstream 261201 38084390 ~ 38099254 (+) True dyrk4
XM_039808354.1 mRNA downstream 63499 38425026 ~ 38436266 (+) True LOC120563876
XM_039808353.1 mRNA downstream 63499 38425026 ~ 38432945 (+) False LOC120563876
XM_039808355.1 mRNA downstream 75598 38437125 ~ 38441152 (+) True ribc2
XM_039808875.1 mRNA downstream 144399 38505926 ~ 38516603 (+) False slc25a18
XM_039808876.1 mRNA downstream 144403 38505930 ~ 38516603 (+) False slc25a18
TU121880 other upstream 304891 38054509 ~ 38055564 (+) False G90583
XR_005640145.1 other upstream 325761 38022377 ~ 38034694 (+) True wfdc1
unassigned_transcript_383 other upstream 1896887 36463486 ~ 36463568 (+) True trnal-cag_1
TU121355 other upstream 2575039 35784694 ~ 35785416 (+) True G90142
unassigned_transcript_382 other upstream 3149524 35210860 ~ 35210931 (+) True trnaw-cca_9
TU122023 other downstream 296839 38658366 ~ 38680087 (+) False G90686
TU122022 other downstream 314048 38675575 ~ 38680087 (+) True G90686
TU122034 other downstream 515523 38877050 ~ 38879902 (+) True G90693
unassigned_transcript_385 other downstream 1392067 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122542 other downstream 1510163 39871690 ~ 39874177 (+) True LOC120563436

Expression Profile