RNA id: XM_039808678.1


Basic Information

Item Value
RNA id XM_039808678.1
length 1206
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC120564044
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 39474362 ~ 39493938 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATAAAGTTtcagtattatatatatatataaatattctgGTCACTTACTTAATCTGTTAACTGTGTAGTAATGGGTTTTTAAGCTCACGCTCGACAAAGACAGGGACCCAAAGAGGAAACACACTTCACTGCTCAGACCACACTGAAGCTGACTTCTCACCAAATATCAAGCAGACGCAGAGGATGCAGCAAATGGAGGTATCTGATTATGTTAATGAGTCACCGAGACCAAAGCAGAAAGGCAGTGGGGATGCAAATCAAACAGAGAGAAGACTCTGCCAGATGGTTGTCTTCAGCTTTGGGCTGCTGTGCGTCATACAAGCCATTCTCAATGTTTCTCTACGCCTGACATTTTCAGATGTTGAGGCTGGTTTCAAAAACCTGACTGAGGAGAGAGATGACCTGAAGAGGAAGCTGAATAAATCTGTTTCAGAGAGAGACACCTTGAAGAGAACCAACTTGAATGTTGAGGCTCGTTTCAAAACCCTGACTGAGGAGAGTGATGACCTGAACAGGAAGCTGAATAACGTAGGAGGATGGGAGTATTTCAGCGGTAGTTTCTACTACATTTCTTCTGTCAAGAAAACCTGGAATGAGAGTAGAGATGACTGTCTTCAAAAGGGTGCAGACCTGGTGATTATCAACAGCAAAGaagaacagaattTCACAATAAAGTTTGAGAAGAGACTGTGGATTGGCCTGACTGACTCAGAGACAGAGGGGACGTGGAAATGGGTGGATGGGACTCCACTGACCAAAAGctactGGGTTTCTGGGGAGCCTAACGATGAGTACGGTGAAGACTGTGGGGAAATAAGtcattttcattcagaaaacAGCTGGAATGATGTAAGCTGTTCCTTTCCACTCAACTGGATCTGTGAAATGAAAGTCCGTCCATAACTCTGaaaccaaacccaccagacagAAAACTAAGGATGATAAATATATTGCTGATACAATTTAAATCTTCTCAAAAGCAACCTGAATATGCTCATGTGAACACATCATTTCCAAGTGAAAATCATTTCCAGCTCAGTGTGAGATAATCTGAAGCCTGGTTATTTGCGCTGCAGTAAAGTGACCTGTTAACATCTAGAAACAAATGTCCAACAAGGGTCACTGTTTTGgctgaaaaaagaagaaaaaactacaATATGTAATACATACTTTGATTTATTGCTTGCTGAATGAATGTATAAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122418 lncRNA upstream 48176 39425296 ~ 39426186 (+) True G90948
TU122397 lncRNA upstream 96268 39377894 ~ 39378094 (+) True G90931
TU122395 lncRNA upstream 107421 39366631 ~ 39366941 (+) True G90929
TU122393 lncRNA upstream 107787 39366296 ~ 39366575 (+) True G90927
TU122332 lncRNA upstream 279828 39193745 ~ 39194534 (+) True G90875
TU122431 lncRNA downstream 13090 39507028 ~ 39511918 (+) True G90957
TU122491 lncRNA downstream 196541 39690479 ~ 39693930 (+) True G91002
TU122522 lncRNA downstream 209384 39703322 ~ 39703733 (+) True G91028
TU122529 lncRNA downstream 260680 39754618 ~ 39757562 (+) True G91034
TU122555 lncRNA downstream 349467 39843405 ~ 39863155 (+) True G91059
XM_039809162.1 mRNA upstream 62499 39404550 ~ 39411863 (+) True LOC120564312
XM_039809314.1 mRNA upstream 186135 39260389 ~ 39288227 (+) True pard6a
XM_039808942.1 mRNA upstream 455577 38906023 ~ 39018785 (+) True LOC120564171
XM_039808685.1 mRNA downstream 4302 39498240 ~ 39506583 (+) True LOC120564047
XM_039808681.1 mRNA downstream 21197 39515135 ~ 39528042 (+) True LOC120564045
XM_039808682.1 mRNA downstream 21197 39515135 ~ 39528041 (+) False LOC120564045
XM_039808683.1 mRNA downstream 34314 39528252 ~ 39535940 (+) True LOC120564046
XM_039809247.1 mRNA downstream 78476 39572414 ~ 39597068 (+) True cfdp1
TU122034 other upstream 594460 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 794275 38658366 ~ 38680087 (+) False G90686
TU122022 other upstream 794275 38675575 ~ 38680087 (+) True G90686
TU121880 other upstream 1418798 38054509 ~ 38055564 (+) False G90583
XR_005640145.1 other upstream 1439668 38022377 ~ 38034694 (+) True wfdc1
unassigned_transcript_385 other downstream 259656 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122542 other downstream 377752 39871690 ~ 39874177 (+) True LOC120563436
TU122992 other downstream 1459670 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 1971766 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 1975305 41469243 ~ 41495311 (+) True vps9d1

Expression Profile