RNA id: XM_039808941.1


Basic Information

Item Value
RNA id XM_039808941.1
length 6396
RNA type mRNA
GC content 0.46
exon number 27
gene id LOC120564171
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 38897554 ~ 39018785 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTTTGCTTACGGACGAAGTAATTTCACCTGGAATGGAACTCTGAGAGAGCTGCAGGGCAGCTGGACAGAACGACGTGGCCCAGCTATGACAACGTCGGCGAGCTCCTCCAGCGGTTTAGAGGTCCTCCTCTCGGCCCTGCAGAATGGAGGGGATGTGGAGAGCACCTTAAATATCCTCAATGTCCTGGATGAACTTCTGTCTGCTGGTACAGATCGTCGTATCCACTACATGATCAGTAAAGGTGGCAGCGAGGCTTTGCTCGTTGCACTGGTCAACGCCGGCCGCAGCTTCAGTCCCAACTACACCAtcctgctgccactgctgcacCTGCTGGCTAAAGTGGGACACAGAGaccgGCGTATAGGTGTGAAGGCAGAGGAGGCTGGAGCTGTGCTGCTCACTCTCAATCTGCTCCGACACAACGCCCAGCACGGCAGCAGGGCCGCAGCCTGCCTCTGGGCCATCCAAGTCTTCTGTTCATCAgTTTCTACTGCAAACCTTATCGGAGCAAACCATGGACTGGATGTCATCTACGGTCTCATCCCTCAGTATAGCACCAAACATCAGCACACCATCAAGGCAGCCATTGATGCCTTTGCTGCTCTACTGTGCACAAaggctaatgttagctccGTGGTGTCTAAGGGTTACGTCTCTGGCCTCTTGCGGCTTTATGAGGACTGGCACAGCAAAGGAAGTGAACATGTAGCAATCTGCCATGCGCTGCTGTGCTGCCTCCATAAGGTCACTCACAGCACTGCAGGCAGGCAGGCCGTCCTGTGCCAGGGAGGCATCAGACTGCTGTATGAAACTACACAGACATGTTTGCTGAGTAAAGGTCTGGAGTCTCTGGTAGAGCTCTCTGTGCAGCTGATGAGGAAGTGTCTTCCTAAAACTCCTCTTCCACTGAAATCAGATCAGTCTGCGTACACCTTCCCCCTGCCTGGAGGACCACATGCTGTCCCTGAGATGGACACAGAACCAGATGAGAGCAGTGACGAGAGTGATGATGACGATGCTGAAGATAAGCCAGAGGCAGACTATGATGACGATTTGGAGACTGACCTGAACAAACTTCGTCTTCGTCCTGACCCAGACAGACCCAAAGAGCTGCTGCCCCAGTACAGCCGCCTCTGTCCTGAACTCTCACATGACTTCCagGAGCTGGATTTGAGCTCCGAGCCAGACGAGAGTTCAACAGCATCATCGTCTTCTTCGTCGGATGAGGAAGATGTGCGGCTCAACAGTTTCCCTTTCCGCTGCTCCAGGCGGGACAGAAGGAGGAGTGCTGCCCGCAGTGACTCTGAGACAGAAGCAAATGGACACACGGCAGctGTTGGCCAGTTAGAGGCCCGTGATTTCCACAGTCACAGCAGCCTCCTCAGCACCAGCCCCCGCTTCAGGACCATGGTTAGAGAGGCCAGGGGAAAAGCCCTCCCAGGTCAGAGAGGGGATGAGCAGGATGATGAGGAGGTGGATGCAGAAGAATCCCACCATCGTACCATGATAGACAAGTTATTGGAGAGACATGGAGCCTGTATTCCCCACCATGACCCCAGGCTGTACCGCGCTGCAGCCGCCAAAACCACATCCATTCCAGGGTTCAGCATCCTGGCTTTCCCTGATTTCTGGGGACACCTCCCACCGCCGGGACATGAACCCATGGCCCCACGCAAACCCAACATACAGAGGCAGAAAGTGTTTGAAGATGTCCGACGTTTCCTGAAtgctgatgacatcatcgaCCAGGTAGTGTTTGACCTGGAAGACAGCAGtctccaGTGTCCGTCTGGTTCCTTGAGGTTCTTCTCAAAGTTTGAGTGTGGGAACCTAAGGAAGGCTGTTCAGGTCCGAAgATATGAATATGACCTGATATTGAATGCAGATGCTAACTGTAACCAGCACACCCAGTGGTTCTACTTTGAAGTCAGTAACATGGTGGCAGATGTCCCCTACCGTTTTAATGTCATCAACTGTGAGAAGAGCAACAGCCAGTTCAACTATGGAATGCAGCCGGTGCTGTACTCGGTAAGGGAAGCTCTGGAAGGTAGACCACACTGGCTCAGGACCGGGACTGAAATTTGTTACTTCAGAAACCACTTTTGTCCAGCTCGAGGCAGAAAGAGAACAACATTTTATACTCTAACCTTCACCATCACCTTCAAACACAATGAGGACGTCTGCTACGTGGCCTACCATTATCCCCACACATACTCTGCTCTGAAGGCTCATCTGAAGGTGCTACAGAAATCAGTGGACCCTGCAAAGGTGTTTTTCCAGCAGCAGAATCTTTGTGGCACTTTGGCTGGAAACTGGTGTCCAGTAGTCACCATCACAGCCTGTCCTGCCAGCAGGGGCTGGAGAGACATGCACCAGCTCCGGAATCGTCCCTGTATTGTGCTAACAGGGCGCGTCCATCCCGGTGAGTCCAATGCCAGCTGGATGATGAAGGGCACCCTGGAGTTCCTGTGCAGCAGTGAGCCAGTGGCCCAGAGTCTGAGGGAGGCCTTTGTTTTCAAGCTCATCCCCATGCTCAACCCAGACGGAGTCATCAATGGCACGAATCGCTGTGATCTCAACAGTGAGGATCTGAACCGCCAGTGGAGTAAACCAGACCCGGTCCTCAGTCCCACCATCTACCATGCCAAGGGCTTCCTCTACTACCTCAACAGTATTGGTCGGACTCCACTGGTGTTCTGCGACTACCACGGCCACTCGAGGAAGAAGAACGTCTTCCTGTACGGCTGCAGTGTGAAGGAGACTCTGTGGCAGTCTGGCTCTGTTGTTAACACTGCGGGACTGAAGGAGGACCCTGGATACAggacCATTCCAAAGACGTTGGATCGCCTCGCTCCCGCCTTTTCTTTCAACAGCTGCAACTATTTGGTGGAGAAGTCTCGCTCTGCCACAGCCAGGGTGGTAGTCTGGAGGGAAATGGGCGTGCTGAGAAGTTATACCATGGAGAGTACTCACAATGGCTGCGACCAGGGAATATAcaagggCCTGCAGACAGGAACCAGGGAGCTGCAGGAGATGGGTGTAAAGTTCTGCCACAGTCTGCTGTCTCTAACCAAAGACATGAAGGCTCTCTACAGCAGAAGAATCAACCACATCGACGTGGACCACAACGTCCTGGACCACAAGTCTCACAACTGTTTTGAAGACGATGAGCCTCCATGTGTTGAGGAGATTGAGTATTCCACAGACTGTCCCGCGCTCAAAGGCACTGATCTGGATTCAGATGTCAACAGCAATATGGCCAGTAGTGATGAAGAGGACGAGGGTGATGAAGGACACAGGAGAGCAAGACATGGACGAGGCAGCATGGGCCAGTTGCAGCAGTTGAGCATGAAGAGCCGTCTCTTTCCTCACCCGATGAGACAGGCCTCCAGCGAGGCCCTCAGTGAGAAGAGAAACGGTGTGGGCATCAATGGACAAATCAtaagttaaaggaatatttctaCATTTCTCTACAGTTCTTCTCTAAAAGGTCTTCTATCATTGTAAGCTTTCCTTCATGGAGCTCAACAGGTGCAttcgaaagaaaagaaatgcctaggtaaatgacacacacaaactaaactACAAGTGGATAACATATAATTTCTCTTTTAACCTTAGAGTAGAGTGTGAGATTAAATACAGGCTTTGGGGAAGGAAAACAATACTCTACACTAAAGTCTGGCTTAATAGAACAATCTTGGTTCACTCACTAGCTTTTTGTGGAGAATTCTTCTCCATCTGAACAGTCCGTGGAGTTGCtaagttgtcatggagatggatATGGATACTTGTGCCTGCTCCACCGCTTGTTAGACATGAGAGGAATGACAAAGCGCTCCAACGGCACCAGAGCAGCTGTCATTACGCACAACTGTAACGTCCTACCACTTTTTCATCACATGCACCTGTAAACCATCGTGGCACTGAAATATCATTGTTAAACATCAGAAAGATGATTAGTGATTAATTTATTAAGCTCATATTGAAACAGACTACAAAGGGCTTCACGTTGCTTTCTCTTGTGATCTCTGACTGCTTCATCTTTACTTGATTGGTGCCGACATGGATTGCGATGTTGCTAAAGCTAGTGGTGGCATGTGACTGGGTTCCCTGATTCTCCCTACTTGATGTCAGCAGATTAGCCTCGGGAACTCTGGCCCTGAGTAGATAGTACACAGGGGCTGCGGTAGCTACCCTTAATCATAAGTCCCCTATTACTAGTGATGGCCATATGAAGcaaaccattttctttattttatgagCCCCCTAGATGGCGCTTTTGGTTTGAAGAAAAAGACTCAATTCTGTGTGCTTTGTTGagcagagagcgccatctagtgggcttagaaaataaagacaatggTTCATGAAGATTCATGAAgattcatgaagcttcatttggccagcACTACCTATTACTAGCATATATTGTATACTTAGCACAATGTTGATGGTGTTGTGTAAAATTACAATTGAATTAATTGagtaaaaatgacaattttattaattaattaattaattatattaCTTAATCGATAAATCATCCAAGTTAGTGGCCCATTAGTTGATCATCAGCATAACATTAACTGTGTAATACTGGCTTTTCTCTGAGCTTCCCCACTGCTCCTCATGGTCTTGGTCATGGTCGGCCATGTGATAACTGGTGGTGGTATATAGACAGGGAGCATCAAGATGTGAGGTTGAAAGCAAACGAAAAGCTCATAAGTAGATGTAGAGTTAAGATTTAGTCATTCCATGTTTGTGAGTGTTCATATGACTATTGGCTCTTTGAAGGTCTTTTCTTTGTTGGATCAGCAGTATGATACATCATTTCCAACACACAAGTCTAAAACGTGTATGACCTCCTATACACAAATACTGTAGCAGTACAAATCTTGAAAGAAAGTGACCATTTCAATCAGACCTAAACTCACATGAAGTGTGGAACTTGGCTCTTATTGAGGAAAGCTAACAATGCGGTCATGCCTTTTTTAAAGCTGAAAAACAGGCTACAGTTTCCAAAAGTCCCAGATGGTAATCAGCTTCTAAATGATTTATTAGCAACTGGTCACCGCGGCAGTATTATAAGATAGTCTTAATAGGGTGGATTGTCTCATGCAACCAATAAATAAGCATAAGTAGAATTAACCCATTCCTATAGGAACATACACACTACATGCTAACTACCTTTTTCTTCAGAAGAAAACAACTCCAGTTAAATTTAGAAGGGTTTCTGTAGGAGGGTTTTACTCAGCAGCGATAAGGAGGGTGcattaattaaaattaataatCCTGGCCAAACACTAGTCCTTGTTAAACGATACTGTAAGTGTACAATAGGTATTTCTACTTTATGATAGCTGAATTTGTGCATGGAATATGTAGATCATACAGTGTAGGGTGGTGCTGTGATCTTTGGTTTGTGTAACAGCTAAATGTATGTGTTATGATCTAGATTTGATAAGATATGTGTAATTTCCATTGACACTCATGGAAAATATGAGGCACTTTGagtaaatgtgtttgttttgtggatCAGATGTGAAGTTTGTTTTCAGTAAAATGTTTAACGTTTAATGTTTGTTGATTTTGTCGTCACTGCTCAGAAACATCAATTTCATTACTCATGTTCATTTTGTTAACAGAAATTATGAATATATTACATTCAAAGTtgttatataaatacataaaataatgttttttaatgAGGAATACAAGATATTGACAAGACAAAACTATGAAACAAAAACTAACACTCCACCTGCTGAGGAAGATTATGTGATGCAAtggaaagctccagaacagcttcTACTGTAAATGGACCTTGTGGTGAGATTGTTAAATACTGTTTCTGAGGTCAAGAATGACCTTCCAATTTCAGTACagataaatactttttttaccaAGTacattttgtggaaaaaaagccCAGAGTactgtattttgttttaatgtttctgattaGTCATACTTGATAATATGTCCAATGCTGGTTTtgtttcaaaatacatttgcaaATCATGTTTCATGTCTGGATGCAGCCCTTCAAATCCCTTGACAAAAgctcacttaaaaaaaacagcattcgGGATCAATCAGTCAGTTTGTGGCCAATTTTCAATCCCAGTTATTTAAGAGGTTCTGACAtggaagatgttttcttaagcTTGATTAAACTGCTCAAACTtggttttgactaaaactagactgtGACTGCCCGTGTTTGTGTGCAGATTTGGACACCTGGGTCGAGTGTTCCACAGGCTGTAAAGGCACAGGTTCCAGTCTACTATCAACCCTGTTGTTTGGTTAAGATCATTTGTTACTTATCTTTTTGTGTTCTTTGATTTGCAGTCTTTTTTGTTATaataaataactttttattCGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122080 lncRNA upstream 26955 38870097 ~ 38870599 (+) True G90722
TU122075 lncRNA upstream 64177 38829741 ~ 38833377 (+) True G90718
TU122037 lncRNA upstream 106875 38790123 ~ 38790679 (+) True G90694
TU122055 lncRNA upstream 108204 38788908 ~ 38789350 (+) True G90706
TU122049 lncRNA upstream 154542 38740914 ~ 38743012 (+) True G90703
TU122322 lncRNA downstream 5230 39024015 ~ 39024251 (+) True G90868
TU122332 lncRNA downstream 174960 39193745 ~ 39194534 (+) True G90875
TU122393 lncRNA downstream 347511 39366296 ~ 39366575 (+) True G90927
TU122395 lncRNA downstream 347846 39366631 ~ 39366941 (+) True G90929
TU122397 lncRNA downstream 359109 39377894 ~ 39378094 (+) True G90931
XM_039809898.1 mRNA upstream 128980 38744888 ~ 38768574 (+) True LOC120564709
XM_039809899.1 mRNA upstream 128980 38753811 ~ 38768574 (+) False LOC120564709
XM_039810058.1 mRNA upstream 157257 38725507 ~ 38740297 (+) False zgc:110789
XM_039810057.1 mRNA upstream 157257 38728463 ~ 38740297 (+) True zgc:110789
XM_039807692.1 mRNA upstream 290702 38582874 ~ 38606852 (+) True nup205
XM_039809314.1 mRNA downstream 241604 39260389 ~ 39288227 (+) True pard6a
XM_039809162.1 mRNA downstream 385765 39404550 ~ 39411863 (+) True LOC120564312
XM_039808680.1 mRNA downstream 455577 39474362 ~ 39493938 (+) False LOC120564044
XM_039808678.1 mRNA downstream 455577 39474362 ~ 39493938 (+) False LOC120564044
XM_039808677.1 mRNA downstream 455578 39474363 ~ 39493938 (+) True LOC120564044
TU122034 other upstream 17652 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 217467 38658366 ~ 38680087 (+) False G90686
TU122022 other upstream 217467 38675575 ~ 38680087 (+) True G90686
TU121880 other upstream 841990 38054509 ~ 38055564 (+) False G90583
XR_005640145.1 other upstream 862860 38022377 ~ 38034694 (+) True wfdc1
unassigned_transcript_385 other downstream 734809 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122542 other downstream 852905 39871690 ~ 39874177 (+) True LOC120563436
TU122992 other downstream 1934823 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 2446919 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 2450458 41469243 ~ 41495311 (+) True vps9d1

Expression Profile