RNA id: XM_039809661.1


Basic Information

Item Value
RNA id XM_039809661.1
length 1415
RNA type mRNA
GC content 0.59
exon number 5
gene id siah1
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 36065628 ~ 36106450 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCAGCGGCAACAGTGTGGTTTCCATGGAAAAGGCCAGCGAAATATGGTGTTGACGGGCTGCGTGAATGCTCGACTCCTATGTCTCTGGTCCAAGTGAAACCAAAGCCAGCTAGCGTAGCACTGCAAGCTCCGCCCTGGAATTCCTTGTACCGACTCTTCTCATGTGTAGCCACAAGGAGCATGCACAGGACTAAAGagGTCCCAACATTTCAAGAGAAGACGAAAGCCTTATTTGGAAATCTTATGGACGAAGAAATGAGTCGCCAGACTGCCACCGCGCTGCCCACAGGAACCTCCAAGTGCCCCCCCTCCCAGCGCGTGCCCACCCTGTCAGGCACCACTGCCTCCAACAGCGACCTGGCCAGCCTGTTTGAGTGCCCTGTCTGTTTCGACTATGTCCTACCCCCCATCCTGCAGTGCCAGTCTGGACACCTGGTATGCTCCAACTGCCGGCCCAAGCTCACCTGCTGCCCCACCTGCCGAGGCCCCCTGGGCTCCATCAGGAACCTGGCCATGGAGAAGGTGGCCAACTCTGTCCTCTTCCCCTGCAAGTACGCCTCATCGGGCTGCGAAGTCACGCTGCCTCACACCGACAAGACGGAGCACGAAGAGCTGTGCGAGTTTCGGCCGTACTCGTGCCCATGCCCCGGCGCCTCCTGCAAGTGGCAGGGCTCCCTGGACGCCGTAATGCCTCATCTGATGCACCAGCACAAGTCCATCACCACGCTGCAGGGGGAGGACATTGTGTTCCTGGCCACGGACATCAACCTGCCGGGCGCCGTGGACTGGGTGATGATGCAGTCGTGTTTCGGCTTCCACTTCATGCTGGTGCTGGAGAAGCAGGAGAAGTACGACGGCCACCAGCAGTTCTTCGCCATCGTGCAGCTCATCGGCACGCGCAAGCAGGCGGAGAACTTCGCCTACCGGCTGGAGCTCAACGGGCACCGGCGCCGCCTGACCTGGGAGGCCACGCCGCGCTCCATCCACGAGGGCATCGCCACGGCCATCATGAACAGCGACTGCCTCGTGTTCGACACGTCCATCGCACAGCTGTTCGCCGAGAACGGCAACCTGGGCATCAACGTCACCATCTCCATGTGCTAGGAACTTTTGAAGAAAAAGAGGGTCAAAAAAGTAACAGATGGTCAGGGGGCATTTTTTTAAGGGGGTCAAATCCGTTGTGACCTCACAGCGcctcccaccccacccccccaccccccctctctGCCTCACCCCTTGAGACGTGGAACTGGACTGTCTGATCGGGCAGCCGTGGAGCCCCAGGGggtgggatggatggatggatggatggatgagtggaaggatggatggatgagtgagtgagtggaaGGATGAGTGGAGGAATGAATAAACCCAAGAACATAACTGTGTAGTGATGGCTATAGACTTCTaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121364 lncRNA upstream 170820 35913071 ~ 35913280 (+) True G90151
TU121351 lncRNA upstream 312699 35770996 ~ 35771401 (+) True G90138
TU121341 lncRNA upstream 386399 35697497 ~ 35697701 (+) True G90131
TU121336 lncRNA upstream 387336 35696005 ~ 35696764 (+) True G90126
TU121335 lncRNA upstream 388615 35694907 ~ 35695485 (+) True G90125
TU121376 lncRNA downstream 593 36107043 ~ 36107491 (+) True G90161
TU121377 lncRNA downstream 1295 36107745 ~ 36108262 (+) True G90162
XR_005640081.1 lncRNA downstream 79513 36185963 ~ 36187960 (+) False LOC120564233
TU121421 lncRNA downstream 79513 36185963 ~ 36188270 (+) True LOC120564233
XR_005639971.1 lncRNA downstream 133698 36240148 ~ 36240998 (+) True LOC120563515
XM_039808979.1 mRNA upstream 35689 36018268 ~ 36048411 (+) True n4bp1
XM_039807509.1 mRNA upstream 390395 35659713 ~ 35693705 (+) True cbln1
XM_039809629.1 mRNA upstream 497559 35512384 ~ 35586541 (+) True si:ch211-212o1.2
XM_039809630.1 mRNA upstream 497559 35546497 ~ 35586541 (+) False si:ch211-212o1.2
XM_039808984.1 mRNA upstream 576816 35338892 ~ 35507284 (+) False znf423
XM_039809155.1 mRNA downstream 262311 36368761 ~ 36390263 (+) True st3gal2
XM_039808455.1 mRNA downstream 323052 36429502 ~ 36431389 (+) True exosc6
XM_039809822.1 mRNA downstream 338643 36445093 ~ 36458111 (+) True tgm2l
XM_039808935.1 mRNA downstream 359245 36465695 ~ 36489643 (+) True LOC120564167
XM_039808936.1 mRNA downstream 359250 36465700 ~ 36489643 (+) False LOC120564167
TU121355 other upstream 298684 35784694 ~ 35785416 (+) True G90142
unassigned_transcript_382 other upstream 873169 35210860 ~ 35210931 (+) True trnaw-cca_9
TU120914 other upstream 1648783 34434089 ~ 34435317 (+) True G89836
TU120882 other upstream 1662919 34381836 ~ 34421181 (+) True G89813
TU120880 other upstream 1721723 34360484 ~ 34362377 (+) True G89811
unassigned_transcript_383 other downstream 357036 36463486 ~ 36463568 (+) True trnal-cag_1
XR_005640145.1 other downstream 1915927 38022377 ~ 38034694 (+) True wfdc1
TU121880 other downstream 1948059 38054509 ~ 38055564 (+) False G90583
TU122023 other downstream 2551916 38658366 ~ 38680087 (+) False G90686
TU122022 other downstream 2569125 38675575 ~ 38680087 (+) True G90686

Expression Profile