RNA id: XM_039809947.1


Basic Information

Item Value
RNA id XM_039809947.1
length 1286
RNA type mRNA
GC content 0.40
exon number 5
gene id dnajc24
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 40270523 ~ 40277195 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGGAACTTTAGTTTCAGGGGGGCTCATTACATCGTTGCACAATATGTCGTCTCTCTGACAGCCAGACCGACagccttgttttaagaaataaaTCCATGGTTTTAAGCGATGTGTGATGCAGCCGAGACGGACCTGTATGCTGTCCTGGGAGCCAGCCCCTCAGACTCGCTCCAGCAGCTCCGACACAGGTACCAGCAGCTGGCCTTGCAGTACCACCCAGACCGTCTCGGAGGCCAGTGTTCTTCAGAAGCAGAGTCCGGTGTGAAGAAGTTCCTAGAAGTGGATGCGGCCTGGAGGATCCTCGGTGACCAGAACAACAGGAAACAGTATGACCTGCAGAGGAGAGCGCAGGAACTGAAACAGGATTGGCCGGTGGATTCTACAGTCTATCTGGAGGACATGACCTGGGACCAggAtgggtgtgtgtatacatacagCTGTCGCTGTGGCGGAGGATTCAACGTCTCCTCCgctgaggtggaggaggagacacAGATGAAGATCACAGATcaggatgatgaagaggaggaaacaTGCAGAGGAGTGGTTGTTTGCTGTGATACGTGTTCGCTCAGTGTGTGCGTCACGTGGTCCTTACATAGACAGACTCAAACTTTAAGGTGCCAACAATAATTAGACTTATTTGGAAAACTTTCaccttttgaaaatgaaaataataccACCCAAAAAAGTTTTACTTACTCAAAtgtaagaatttaaaaaaacattctaaatttggtgcaaaatgtaaaaaatgtttggtatgtgttttaaaatgatacatgttttttatgtgtatttCTTATCTtgcaatacaaatatataatatatataggaACTTTTTAAAGTTGAATGAGGGGTCGGAAAAATAACCAGCCTCGGCTTCATCCCGCTCCTTTTTGGACAGATTGAACATATTATTTGTAACACTTCATAgatattgtttttccttttggtgTGTTGCTACGCacttattgtgttttttattttatttcttatttattttttgttcaaatataaataaagaaagaaattaagTAGCCCATACTAGATTATTTTAAGTGATTTTCCTGATCAATTACATTTTACTCTGCACTTTGTTTTCAGTACAAATAAAGTCAAGTTTAGCTAACAATTTTATAacctttaatataaaaaatcaCATTCTCTGTACAAAACTGTTCACTTTGTCTACTTAACTGTTTAAGTTCAATGAAGCTGAACACTccttaatatatataatatccctcctgttgtctttgggtcaaatctgacccgttttcaa

Function

GO: NA

KEGG:

id description
K17867 DPH4, DNAJC24; diphthamide biosynthesis protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122711 lncRNA upstream 73486 40195124 ~ 40197037 (+) True G91188
TU122708 lncRNA upstream 77233 40192792 ~ 40193290 (+) True G91186
TU122706 lncRNA upstream 78358 40191803 ~ 40192165 (+) True G91184
TU122704 lncRNA upstream 78788 40190730 ~ 40191735 (+) True G91182
TU122703 lncRNA upstream 80344 40189607 ~ 40190179 (+) True G91181
TU122744 lncRNA downstream 2027 40279222 ~ 40279865 (+) True G91218
TU122758 lncRNA downstream 26376 40303571 ~ 40303787 (+) True G91229
TU122759 lncRNA downstream 26669 40303864 ~ 40304320 (+) True G91230
TU122815 lncRNA downstream 202662 40479857 ~ 40492323 (+) False LOC120564712
TU122818 lncRNA downstream 218059 40495254 ~ 40495490 (+) False LOC120564712
XM_039809299.1 mRNA upstream 295543 39973618 ~ 39974980 (+) True LOC120564391
XM_039809297.1 mRNA upstream 307115 39944716 ~ 39963408 (+) True ric8a
XM_039809298.1 mRNA upstream 307115 39944716 ~ 39963408 (+) False ric8a
XM_039807593.1 mRNA upstream 396346 39871711 ~ 39874177 (+) False LOC120563436
XM_039807999.1 mRNA upstream 583474 39640762 ~ 39687049 (+) False bcar1
XM_039809936.1 mRNA downstream 99105 40376300 ~ 40400951 (+) True LOC120564733
XM_039809937.1 mRNA downstream 99105 40376300 ~ 40400951 (+) False LOC120564733
XM_039809939.1 mRNA downstream 99105 40376300 ~ 40400951 (+) False LOC120564733
XM_039809938.1 mRNA downstream 99105 40376300 ~ 40400951 (+) False LOC120564733
XM_039810042.1 mRNA downstream 124913 40402108 ~ 40414480 (+) True LOC120564785
TU122542 other upstream 396346 39871690 ~ 39874177 (+) True LOC120563436
unassigned_transcript_385 other upstream 516858 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122034 other upstream 1390621 38877050 ~ 38879902 (+) True G90693
TU122023 other upstream 1590436 38658366 ~ 38680087 (+) False G90686
TU122992 other downstream 676413 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 1188509 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 1192048 41469243 ~ 41495311 (+) True vps9d1
XR_005640073.1 other downstream 1192048 41469243 ~ 41495311 (+) False vps9d1
XR_005640076.1 other downstream 1192048 41469243 ~ 41495311 (+) False vps9d1

Expression Profile