RNA id: XM_039809977.1


Basic Information

Item Value
RNA id XM_039809977.1
length 4910
RNA type mRNA
GC content 0.47
exon number 25
gene id si:dkey-30c15.10
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 41027281 ~ 41050823 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggccaccgtagtaCGGTTGTATGGACACCGCTGACGTCAGAAGACCCGCTGAAATTCAAAGTTAGATGAGGAGAGAGCAATAAGGttgtttcttattttctgttagTTAGCGTTGAGTTCCATTTTGTACAGATTGTAGTTTAATACAGACTTCTTTTCAGCTCAGTATGGAAGCTGGCGAAGAAAATGTTGGCAACGTCAACTTGAAAAGACAGAGAGCACCTCTGTCAGATTCTGAAGACAATGCCTTCTCACAAtcagAGGTGAATGATGGCCAGAAGCGGCGACGTCTGGAGGCAGCTGGTCAGGAGAATCTCAGTCCTAAACCATCCTCCTCTGTACACCGAGCTGAGGTAGAGACAAAGCCAGACACACCGATGGTTCCTTCAGTCCGGTCCCGAGTCCAGCAACTCACCCAGAGACGAGAGGGGGGAGCTCCTCTGGCCCAGCGGTGCCTGTCGGACCCTGGGGCTGGCAGCCCATCGGCCATCCTCGAAAAGGGCTTCAGGAAGCATTGCCTTGGGGAGGGAGAGTTTAATCATCGACTGGAGCGTTTCAAAGTGCCAGTCTTCCAGGCTTGCCCAGCCCCCACACCGAGCTCTGCTGACCCCTCGCCGCGGACCCGCTCCAACTTTGTGTCTGCCATTCAGCAGAAACTCCACGGCACCCCAGCACCTAGCTCCAAGCAAGCTTCTCGCATGCGCCAGGAACGGGAACAGGAGTTGAGCCAGTTGCATATCCATCCAATCAGTGAGAATGCCTGGCTGAAAAGGAGCAGCTCTGATCCCTCGTTGTCTCAGAGATGGACCCCTCCTGGCCCCTCAACTAACTCCACCTGGGTTCCTAGATCTAGAGGGAGAGTTTGGCCTCCTATGCAGCCCTGGGATCAGATGGATGGTGATGCTGAGATGAAAGATGGCAGCTTCATTGAAGCTCCCGCATCACGTGCAGAGAAGCAATCCTCAGATGGAAAAGGTGAAAGGGCCCCCAGTGACACTGAAGCATCTGTAGAGATTACAACCTCTAATGAGGGGCAGCAGCACATGAAATGCAAGGAGCAAAATGCTTATCGAGGTGATGACATCAGGGGGGAGAAAGAGTACAAGGCTTCAGTTGCAAATGAAGAGGAGCAGCTAGGGACCCAACGACCACACACCCAGACTGTATTGAAGTTGTCTTTTAGCGAGGATCAGAGTTTCTCCAAAGCACCTTTTGGTGAGGACCAGAACATGTCAGAGTTGCCTACAGGTGATGAGCAAAGCTTGCTAGAATCAACTCATGCAGAGGAGTCAAACATGAACACAGAAACAGTTGAGGATTCCATAGTAGCTGAACAGGACAAGTTTGAGGTGTTTTCATGTGAAGAAATTGATGGTTCTACATTCAGTGAAGAGGGAATTGAGCCTTCAACAGATGAGGAGTCAAGGTCGTGGAGATATCCTCAAGACAAGGTGTGCAAGGAGGAAAACGTGTCTGTTAAAGAGGAGGAAAGGGAGTTGGAATCATCAAGAGTGGAAAAGGAGACGAGAGTCAGTGTTTCAGATCATAGTGAACCGTCGGACATCCTGGATGGTGAATGTGAATTGGGCGATATCTCTGGTGGGATTGCTGGCTCCTCTGAAATGCAAGAAGATAAGAAACCTAGACCTGACGAGGATGAGTCAGAAAGCTGTTTAGATGCCTCTGTGAAACACCAATCTAATTTAAACCGAGACCAAGGGAACACAGAGTCATGTAAAGGATTTTCTGCAATGAAACTAAACCAGAAAGACACAAGAGAATGTACTCGTAGGAAGGATATGAGGCAAAAGGCaacagagggaggagaaagcTCAAAGAAAGTCACTTTTATCCTGGAGCCTGAGCTAATCAATGACTCAACCCTGTCTGAGGCCAGTACCTCCATGGAGTCCAGGGCAGAGACAAGTATGTCAGATACTGAACTGAGCTCTCATGATGAGACCAACACCGCTGAAATGATTGACCAGATGTTCGAGGAGGTGCTGGAATATGCTGGAAGGTTggaggagaggggggatgaAGACACCGAGGACCACGACAGTGGCATTGGCGTTTTCTCTGGAGACAAAGATAAGCTGGACACAGAGTCTGAGAAGGAGAAAAGTGAAGAAGAGGTGGAGTCTAAAGCGGAAGAGTGTGATGAGAGCAATAAGCTTGAAAGCAACAGAGATGAGCTGCTGACTTTTCCTCCCAGCGGcatcctctctcctctcagcAGGTCTGTGGAGGCTGTGGTCACCCCTCTGCGACTGGCAGCGAGCCAGGAGTCCAATCCTCCCTCTCTGCTCTTGACTCCAGAAGAGACCACCACCCCTCTTGCTGAATCTGCTCCACTATACAGTATTGATGCCTACcgcacacaaagacagaaaaagctGCCCACCATTCAGAATGTCACTCCTAGGGTTCAGAGACAAGCTCCTGAGAAGTCCCAACCTCAACCCTTTGTCAACACCAAGGAGAAAATCGCGGCTCTGAATGAAGAAGCAGGGAAGCTGCAGTCTGTGATCAGCCAGACCCTGCAGGCTCTGAGCTGCTGTACTGATGAGGAGCATGGACGCGGCTCgctggaggaggctgaagcTGAGAAGCTGCTGTTGGTCTCCTGTGAGAGACGCTCTGCCCTTCTGGCAGAGATGGCCAGactgagggaggagaggaactCGGGAGATGCAGCAGGAGAGGACCGGGAGGATGTTTCCCAGCAGGCCTGCAGAGGGACTGTCGGCATCACAAACATCCAGCTTCCTCTTAAGGTGGAATTTGTCTGCTCCTCACACAACCGCACAGGTCGGCCAAGTCACTACTTCTTCGTCCTGATCCGCTACGGGCCCTGCAACATTGTCGCCACCCCGCTGGCCACGGCTGCTGATGCTCAGAATGGAGACACCATCTCCTTCCCTACTTCTGTCACTCTGAAGGACATTCGATCACACTTCGAGATTGATGTGGAAGTCTACAGCCTGTCCCACACTTCAGGTAGTAACTGCAGCGTGGACCGGACCACCACCAAGTCACGGGTCACACCAAGAAAGCTTCTGAACACTATCACAAGATCCAGTAACAGTCTAACAACTGGTGCTCTTCCTGCTCTCAACACTCGTCGCTCCAGCAACTTTTGTCTGGTGGGCTCTCATAAAATCACCTTAGCCTCACTGGGACACAGCAAGTTCCCTCTGGATAAGATGAAACTTGAAGGCAAAATCAGGAGGCTGCTGGGAGATGAATTTCAGGAAAAGGTGCCTTTTCTCTCACCTCTAGAGGGCAACATCTACCTGCGACTGGACAGTGAAGGCCACTCTGATGTACAGCACCAAGGCTTCCTGACGATGTTTGAGATGATCAGTGGATACGGTGTGTGGCATCGCAGATATTTTGTTCTGGTTGGATGCAACATGTACTACTGGAACCACCCCAATGACCAAGAAACTAAGGATGCAGAGGGCAGCATTTCTCTGTCCAGCTCCCCCGGTCAGTGTGTGAGGCCTGTGAAGAGGGACGCGTGTGCTCGACCTTTCACCTTTGAGCTGGTGAGCAACATCAAACGGCAGCAGGACGCCAGCCAGGAAGCCTTGGCCAGGTTTTCCGCTGACACCAAACAGGAGAGCTTGGACTGGATGGAGAAACTCAGTCAAGCTCTTTTGGACTTTCACACATGGAACCGAACATCAGCAACCCAAACGGAGAGTCAACAGTCAAACACGTCCATCAGTGGGACCCTGAGGGAGAGCATACTGTAACTACATCACTAAGCCAACATATCTACTCAGATGTGATCTCAGATAGTTTCTGTTGCCTGGGATCCATGAAATCACTGTGGGAGCAGCTTTTATGTTTGCAGGTAGATGAACTGACATCAGGGTTTAGATTCTTTATTTCAGTGCTGCAGGAGATCAGTGTCTTATTTATAGGCTCTGCTTTACAATCAACCAGGCAAAACGTTATACATCTCAcattaatttttctttttgggAGACCTCTTTTTGATTTTCATactattgtttatttcttttaatctgAATCCAATCATTTACTGTtggttttcactttttttttatttgctcagtAACTGTTGCCATTTCTTTGTCATGATTTTGTGGAAAAAGGTTTAATTTTGGCTTTTTCTGTGGCAATCAGCTGCTTTAGCCTTTGTTGGCAATATTTGGTCACTTTCCGTAGCTAAGGTGAAActtgtagcatatatatatttttgagaTAACTTACTCATGTATTTAGAATTAAACTGGAAGCATTTATATAGATGATATAGACACTAATAAATATTGAAGGAGATGGAAATCTTTAACTCTACTAAACTAATGTAGAATGAGAATGTATTTGAAATGGCAGGAAAACTACGAATCATTAAAATATAGAAGGAATGCTAGTGTTGGAATGGGAGCCTTTCGTACTCCTACCGACAGACGGCATCTGATTCTGTTGGGTAAAATAATCCTTGTCAGGTGGAAGCAGGCTTTTGTTCCACTGAACCAGAAGGTATTTGGCTGTGTGTAAAATTTGATGTCGTGTCACTGGCACTGGCATCTTGGGAGTTTCACTTCCTACCCAGTGACCTGCAGTGTTAACTTATATTCCTAACTACAtaattttacaatttacaatacataaaaaaaacacatttacatatctaaaaaaaaaaaaaaatactattataCGTGTAATACAGTGGATGAGAGAACTGgtgagagaagagaggggaCTGTAGTGATGCTGCTACAATGAATGTAGTCTGTTCTGTCTGATGTCCTGTTCTTTTCCATGTATTTCTACCTATTAGTCTGTCACTTTGTTATAAATGTTATTCATATGAACTCTCATTCTATGCACTTAATCGAAGGTACCAATTAAATAAATGGATTTGAAATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122949 lncRNA upstream 80013 40947755 ~ 40950042 (+) False smpd3
TU122947 lncRNA upstream 169167 40843078 ~ 40860888 (+) True G91383
TU122924 lncRNA upstream 302637 40727146 ~ 40727418 (+) True G91363
TU122919 lncRNA upstream 317101 40712744 ~ 40712954 (+) True G91358
TU122916 lncRNA upstream 325627 40703181 ~ 40704428 (+) False gins3
TU123017 lncRNA downstream 10603 41061426 ~ 41064286 (+) False exoc3l1
TU123045 lncRNA downstream 159681 41210504 ~ 41211463 (+) False G91451
TU123046 lncRNA downstream 159794 41210617 ~ 41211799 (+) True G91451
TU123061 lncRNA downstream 288147 41338970 ~ 41339360 (+) True G91465
TU123271 lncRNA downstream 514260 41565083 ~ 41566409 (+) True G91614
XM_039809968.1 mRNA upstream 13032 40960853 ~ 41017023 (+) True LOC120564750
XM_039809970.1 mRNA upstream 13032 40960853 ~ 41017023 (+) False LOC120564750
XM_039809969.1 mRNA upstream 13032 40960853 ~ 41017023 (+) False LOC120564750
XM_039809972.1 mRNA upstream 13032 40960853 ~ 41017023 (+) False LOC120564750
XM_039807574.1 mRNA upstream 74108 40953506 ~ 40955947 (+) True LOC120563418
XM_039809989.1 mRNA downstream 3567 41054390 ~ 41078222 (+) True exoc3l1
XM_039809990.1 mRNA downstream 30338 41081161 ~ 41096714 (+) True prmt7
XM_039809994.1 mRNA downstream 56952 41107775 ~ 41116725 (+) True coq9
XM_039809995.1 mRNA downstream 66942 41117765 ~ 41122654 (+) True polr2c
XM_039809996.1 mRNA downstream 66974 41117797 ~ 41122654 (+) False polr2c
TU122992 other upstream 74299 40953608 ~ 40955756 (+) False LOC120563418
TU122542 other upstream 1155878 39871690 ~ 39874177 (+) True LOC120563436
unassigned_transcript_385 other upstream 1276390 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122034 other upstream 2150153 38877050 ~ 38879902 (+) True G90693
TU122022 other upstream 2349968 38675575 ~ 38680087 (+) True G90686
TU123237 other downstream 414881 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 418420 41469243 ~ 41495311 (+) True vps9d1
XR_005640073.1 other downstream 418420 41469243 ~ 41495311 (+) False vps9d1
XR_005640076.1 other downstream 418420 41469243 ~ 41495311 (+) False vps9d1
XR_005640074.1 other downstream 418420 41469243 ~ 41495311 (+) False vps9d1

Expression Profile