RNA id: XM_039809995.1


Basic Information

Item Value
RNA id XM_039809995.1
length 1034
RNA type mRNA
GC content 0.50
exon number 9
gene id polr2c
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 41117765 ~ 41122654 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGGATGGTAAATATTTCCGTGGAGGCCTTCAAGTCTAAGCTGCGGTAGTTGAGTTTGTGGACGATTTTACAACGTCAATTTTTAGGCTTATTTAACTCCAATAATGCCGTATGCTAACCAGCCGACGGTGAAAATCACAGAACTGACAGACGAAAATGTCAAATTTGTCATTGAAAACACAGATTTGGCGGTTGCAAACTCTATCCGCCGCGTCTTCATGTCAGAAGTTGCCACTATAGCAATTGACTGGATCCAGATCGATGCCAATTCATCAGTACTGCACGATGAGTTCATTGCACACAGAGTTGGTCTCATACCTCTCACAAGCGATGACATTGTGGACAAAATGCAGTATTCTAGGGACTGTACCTGTGATGATTTTTGCCCAGAGTGTTCTGTCGAGTTGACGCTGGACGTGCGATGCACTGAGGACCAGACGCGTCATGTCACGTCGCGCGACCTTCTGTCCAACAACCCCAGAGTCATCCCGGTGACTTCTAGGAGTCGAGACAATGATCCCAATGACTACGTCGAACAAGATGACATTTTACTGGTGAAGCTCCGTAAAGGTCAGGAGCTGCGGCTCAGGGCGTACGCCAAGAAGGGCTTTGGTAAGGAGCACGCCAAGTGGAACCCAACAGCGGGGGTTTCCTTCGAGTACGACCCAGACAACGCACTGAGGCACACGGTCTTCCCCCGACCTGAGGAGTGGCCAAAGAGTGAGTACTCCGAGATAGAGGAGGATGAGGTTCAGGCTCCCTACGACCCCAATGGAAAACCAGAAAGGTTCTTTTACAACGTGGAGTCGTGCGGCTCTCTGCGACCGGAGACCATCGTCATGTCGGCGCTCGCCGTCCTCAAGAAGAAGCTCAGCGACCTGCAGACTCAGCTGAGCCACGAGATCCAGAGCGACGTGCTCACCATCAACTGAGGGCTGCAGTTACACCGCAGATTGGCAGTGTTCCACTTACACtattagattattattttgttaaatgttactttttaaataaatccatcTTGAGGAACTTCA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03011 RPB3, POLR2C; DNA-directed RNA polymerase II subunit RPB3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123017 lncRNA upstream 53479 41061426 ~ 41064286 (+) False exoc3l1
TU122949 lncRNA upstream 167723 40947755 ~ 40950042 (+) False smpd3
TU122947 lncRNA upstream 256877 40843078 ~ 40860888 (+) True G91383
TU122924 lncRNA upstream 390347 40727146 ~ 40727418 (+) True G91363
TU122919 lncRNA upstream 404811 40712744 ~ 40712954 (+) True G91358
TU123045 lncRNA downstream 87850 41210504 ~ 41211463 (+) False G91451
TU123046 lncRNA downstream 87963 41210617 ~ 41211799 (+) True G91451
TU123061 lncRNA downstream 216316 41338970 ~ 41339360 (+) True G91465
TU123271 lncRNA downstream 442429 41565083 ~ 41566409 (+) True G91614
TU123283 lncRNA downstream 465988 41588642 ~ 41648759 (+) False G91625
XM_039809994.1 mRNA upstream 1040 41107775 ~ 41116725 (+) True coq9
XM_039809990.1 mRNA upstream 21051 41081161 ~ 41096714 (+) True prmt7
XM_039809989.1 mRNA upstream 39543 41054390 ~ 41078222 (+) True exoc3l1
XM_039809978.1 mRNA upstream 66942 41030054 ~ 41050823 (+) False si:dkey-30c15.10
XM_039809998.1 mRNA downstream 16985 41139639 ~ 41194448 (+) False wwp2
XM_039810000.1 mRNA downstream 16985 41139639 ~ 41194448 (+) False wwp2
XM_039809999.1 mRNA downstream 17528 41140182 ~ 41194448 (+) True wwp2
XM_039810004.1 mRNA downstream 73805 41196459 ~ 41209096 (+) False adat1
XM_039810001.1 mRNA downstream 77639 41200293 ~ 41209096 (+) True adat1
TU122992 other upstream 162009 40953608 ~ 40955756 (+) False LOC120563418
TU122542 other upstream 1243588 39871690 ~ 39874177 (+) True LOC120563436
unassigned_transcript_385 other upstream 1364100 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122034 other upstream 2237863 38877050 ~ 38879902 (+) True G90693
TU122022 other upstream 2437678 38675575 ~ 38680087 (+) True G90686
TU123237 other downstream 343050 41465704 ~ 41467317 (+) False LOC120564397
XR_005640072.1 other downstream 346589 41469243 ~ 41495311 (+) True vps9d1
XR_005640073.1 other downstream 346589 41469243 ~ 41495311 (+) False vps9d1
XR_005640076.1 other downstream 346589 41469243 ~ 41495311 (+) False vps9d1
XR_005640074.1 other downstream 346589 41469243 ~ 41495311 (+) False vps9d1

Expression Profile