RNA id: XM_039810058.1


Basic Information

Item Value
RNA id XM_039810058.1
length 2638
RNA type mRNA
GC content 0.46
exon number 13
gene id zgc:110789
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 38725507 ~ 38740297 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTCTCTGTGCTTTGCATACCACAACCTGAGCCTATAGGCTGAAGCTGACATGACTCCAGAAAAGGACAGTAATAGCCTTGACACCTATACATTTGGACTCGAAGGGCGCTTTTGTGATCTACCTGACACAAAAAATGGAGAAGAAATGGAGGGAGACAACAACAAGCTAGCATACTGTGTGACCGATGTACCTCCCTGGTACCTGTGCATCGTCCTAGGCATCCAGCACTGTTTGACTGCATTTGGAGGTATCATCGCCATCCCGTTAATCTTGTCTTCGGGGTTGTGTCTGCAGTTTGATGGCCTCACACAAAGCCACCTCATCAGCACCATCTTCTTCGTCTCTGGCGTATGCACTCTGTTGCAAGTTACTTTCGGCATTAGACTGCCCATTCTCCAAGGTGGTACATTCACATTGCTGGCACCTTCCATGGCAATGCTGTCCATGCCAGAGTGGACATGTCCAGCTTGGACCCAAAATGCCAGCCTAGTCAACACCTCCTCCACAGACTTCATAGAGGTGTGGCAGAGTCGAATGAGAGCACTGCAGGGATCCATTATGGTGGGCTCACTCTTCCAGGTGTTTGTTGGTTTCTCCGGCCTCATTGGCCTCTTCATGCGCTTCATTGGACCTCTCACCATTGCTCCCACCATCGCTCTCATTGGACTGTCCCTGTTTGACTCAGCTGGTACCAGTGCTGGCAACCACTGGGGCATCTCTAGCATGACCACAGCACTGATCATCCTATTCTCCCAGTACCTCCGTCACATATCTGTGCCCTTTCCTACGTACAGCAAAGAGAAAAAGCTGCACACCTCCCGTGTCTACATCTTTCAGATTCTCCCAGTTCTGCTTGGAATCACTCTATCTTGGCTCATCTGCTACATTTTGACAGTCTCCAATGTTCTTCCTACTGAACCAGACCGGTATGGCTACCTGGCCCGCACTGATCTAAAGGGAGATATTGTGAGCCAAGCTCCTTGGTTCAGTTTTCCGTACCCAGGTCAGTGGGGGATGCCGACTGTGAGCCTGGCAGGGGTGGTTGGCATCTTGGCTGGTGTGATTTCCTCCATGATAGAGTCTGTAGGGGACTACCACGCTTGTGCCAGGCTTTCTGGGGCTCCACCTCCCCCTAAACATGCTATCAACAGGGGTATTGGCATCGAGGGACTGGGCTGTCTGTTGGCGGGAGCCTGGGGTACAGGAAATGGTACCACTTCCTACAGCGAGAATGTTGGAGCCCTCGGTATTACAAAGGTTGGCAGTCGCATGGTGATAGTAGCCAGCGGAGTCCTGATGGTTGTCATGGGTGTGTTTGGTAAAGTGGGCGCCATATTCACCACTATCCCATCACCCGTGGTGGGAGGGATGTTCATGGTTATGTTTGGCGTCATCTCTGCAGCAGGAGTTTCTAATCTGCAGTATGCGGATATGAATTCTTCTCGAAACATCTTCATTTTTGGCTTCTCCATGTTCTCTGGTCTGGTCATTCCTAACTGGATATTTAAGAACCCCACAGCTATTTCTACAGGTGTTGCTGAAGTTGACCAGGTGCTGCAAGTACTTCTGACAACCAGTATGTTTGTAGGAGGTTTCTTTGGCTTCATACTGGACAACACAATTCCAGGATCAAAGCATGAACGAGGCATCCTGGCGTGGAACAAGGCTCACGAGGATGACTGCAGCAACACGCTGGAGAGCGGAGAAGTCTACAACCTTCCCTTTGGCATCAGCTCGTACTTGTCTTCTTCCTCCTGGCTGCGGTACATACCTTTCTGCCCTCCTGGTGAGTCCAGCTCCCTGGATGGATGCACAGCAGATACTAATGCCCTGGAACCTAAGCAGCCACTCGGACATCCAGAGCCTTCACAGATCATTATTGGAGTTGCTATGTGAGTTGTGTGCTCACTTCAGCATGccatttttgggggattttttctctccaaaaacCGTCAGAGGCAGCTCAGTTTTGGATCTCCTGTCCTTTGTTAAAAACATATTACTGTAACAACATGGAGAAAAGTATTCCATGTGACCTTTTGGAGTGACATTTGCAAAAAAGCACCTTGCATAAGATTGGTTAATATATGGACTTTCTTAAGGGGGGTGCTTAGATATCTGAAGTTATAtttagttgattttttttaaattatttttaataaaaagctgactatatatatattatacagtgtatatgtatatatatatatatagctatatatattcttgaaaacattttttctgtACAGTAATTTGTATTCACAGAGCATAACAATGTTGCGCATAAACAATGATTCATTTAGTTTGCTTGATGTTTTATTAGATTTCTTCCGTCTTATCAGTCTTAGATTATGATCACAACCACGTGATGTGAATGTAATGCCTTATTCAGCATATAAATCCAACGTATGGTTTCTAGTATACCATATTTAATAATTGTGTCATTATCAGTCTATGCATTTTACCTATTTGTGGCAACCGTTTCTGACAGGATTTCTCTCTCAGGCTCCTTTTACCCTGCCAGCATACAAGATGCAGTGTTTCCTCAATGCACAAACCAGGACTGCCCTCTGATCTTAATGAATATTTTTCTTACGTGCATATTAAACTCCATTATGGAGCCACTGCGTTGCAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122030 lncRNA upstream 33486 38687484 ~ 38692021 (+) True G90692
TU122021 lncRNA upstream 60154 38654020 ~ 38665353 (+) True G90685
TU122018 lncRNA upstream 102608 38616712 ~ 38622899 (+) True G90682
TU122006 lncRNA upstream 146478 38575361 ~ 38579029 (+) True G90674
TU121979 lncRNA upstream 167356 38556657 ~ 38558151 (+) False G90653
TU122049 lncRNA downstream 617 38740914 ~ 38743012 (+) True G90703
TU122055 lncRNA downstream 48611 38788908 ~ 38789350 (+) True G90706
TU122037 lncRNA downstream 49826 38790123 ~ 38790679 (+) True G90694
TU122075 lncRNA downstream 89444 38829741 ~ 38833377 (+) True G90718
TU122080 lncRNA downstream 129800 38870097 ~ 38870599 (+) True G90722
XM_039807692.1 mRNA upstream 118655 38582874 ~ 38606852 (+) True nup205
XM_039807693.1 mRNA upstream 118655 38582874 ~ 38606852 (+) False nup205
XM_039810041.1 mRNA upstream 154883 38563908 ~ 38570624 (+) True dennd11
XM_039808806.1 mRNA upstream 178009 38529277 ~ 38547498 (+) False bcl2l13
XM_039808805.1 mRNA upstream 178009 38529282 ~ 38547498 (+) True bcl2l13
XM_039809898.1 mRNA downstream 4591 38744888 ~ 38768574 (+) True LOC120564709
XM_039809899.1 mRNA downstream 13514 38753811 ~ 38768574 (+) False LOC120564709
XM_039808941.1 mRNA downstream 157257 38897554 ~ 39018785 (+) False LOC120564171
XM_039808947.1 mRNA downstream 165707 38906004 ~ 39018785 (+) False LOC120564171
XM_039808942.1 mRNA downstream 165726 38906023 ~ 39018785 (+) True LOC120564171
TU122023 other upstream 45420 38658366 ~ 38680087 (+) False G90686
TU122022 other upstream 45420 38675575 ~ 38680087 (+) True G90686
TU121880 other upstream 669943 38054509 ~ 38055564 (+) False G90583
XR_005640145.1 other upstream 690813 38022377 ~ 38034694 (+) True wfdc1
unassigned_transcript_383 other upstream 2261939 36463486 ~ 36463568 (+) True trnal-cag_1
TU122034 other downstream 136753 38877050 ~ 38879902 (+) True G90693
unassigned_transcript_385 other downstream 1013297 39753594 ~ 39753665 (+) True trnap-ugg_2
TU122542 other downstream 1131393 39871690 ~ 39874177 (+) True LOC120563436
TU122992 other downstream 2213311 40953608 ~ 40955756 (+) False LOC120563418
TU123237 other downstream 2725407 41465704 ~ 41467317 (+) False LOC120564397

Expression Profile