RNA id: TU123547


Basic Information

Item Value
RNA id TU123547
length 469
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id G91827
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 83806 ~ 423652 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacacagacacacacagacagacacacacagacagacacacacacacacatacacacacacacacacacagacacacacacagacagacacacacacacagacacacacacacagacagacacacacagacacacacacacacacacacacacacacacagacacacacacacaacaacacaacgaacagacacacacacaacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacagacacacacacacacacaacacacacagagacagacacacacacacacacacacacagagacagacacacacacacacacacacagagacagacacacacacacacacacacagacacacacacacacacagagacagacacacacacacacacacagagaaacacacacacacacacagacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123580 lncRNA upstream 47456 151624 ~ 151944 (+) False G91840
TU123579 lncRNA upstream 47456 151699 ~ 151944 (+) True G91840
TU123578 lncRNA upstream 48474 150540 ~ 150926 (+) True G91839
TU123558 lncRNA upstream 60843 92274 ~ 138557 (+) True G91829
TU123555 lncRNA upstream 62833 83806 ~ 136567 (+) False G91827
TU123586 lncRNA downstream 57114 257904 ~ 274268 (+) False G91842
TU123593 lncRNA downstream 57114 257904 ~ 306121 (+) False G91842
TU123584 lncRNA downstream 72348 273138 ~ 322857 (+) False G91842
TU123588 lncRNA downstream 72348 273138 ~ 322643 (+) False G91842
TU123589 lncRNA downstream 72348 273138 ~ 318106 (+) False G91842
XM_039811808.1 mRNA upstream 39943 141925 ~ 159457 (+) True LOC120565788
XM_039811713.1 mRNA downstream 583409 784199 ~ 808239 (+) True stx6
XM_039811714.1 mRNA downstream 585912 786702 ~ 787874 (+) True LOC120565732
XM_039811715.1 mRNA downstream 585912 786702 ~ 787874 (+) False LOC120565732
XM_039811716.1 mRNA downstream 585912 786702 ~ 787874 (+) False LOC120565732
XM_039811564.1 mRNA downstream 631451 832241 ~ 854498 (+) True wdr18
TU123552 other upstream 43692 154852 ~ 155708 (+) True G91827
TU123592 other downstream 72348 273138 ~ 317968 (+) False G91842
TU123666 other downstream 308351 509141 ~ 566466 (+) False G91887
TU123686 other downstream 340901 541691 ~ 542909 (+) True G91897
TU123696 other downstream 380017 580807 ~ 593877 (+) True G91903
TU123859 other downstream 521583 722373 ~ 758976 (+) True G92019

Expression Profile