RNA id: TU123595


Basic Information

Item Value
RNA id TU123595
length 719
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id G91842
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 257904 ~ 342692 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcCGAATCAAATATTTAAAAGGTCACGATTCATCTCGTAGCCGATTGGCTCGTttccaggcttaaaactctttatttAAGCATTAAATTAAACGTCAACGGACATGTTGAACGGGAGGAAAAAAACCACTTATGGAACCAGAGACGTTCAAAGAGAGCCGGGCGCTCGATGCCGAGCTGGAGCGTTTGGGGATGTTTAAAGTCAGCGGGAGATTGCGCGAGCTTGTGGCGGCCCGCtggtcccgggacagtcatcatggtgacacaaacatgcagcggtggaagaagtattcagatccttcactAAGTATTCAGTAttattaagtaaaagtactaataacacactgtaaaaatactctgttaaagtcctgcattgatgtgtgtgtgtctttctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtttctgtgtctgtgtgtttgtgtgtgtgtgtgtctgtctgtgtgtgtgtgtctgtctgtctgtctgtgtgtgtttgtgtgtctgtctgtctgtctgtgtgtgtgtctgtctgtctgtgtgtctctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtctgtgtgtgtgtgtctctgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123597 lncRNA upstream 28297 196596 ~ 244841 (+) True G91843
TU123553 lncRNA upstream 72348 126328 ~ 200790 (+) False G91827
TU123550 lncRNA upstream 72348 126549 ~ 200790 (+) False G91827
TU123547 lncRNA upstream 72348 199400 ~ 200790 (+) False G91827
TU123549 lncRNA upstream 72348 200464 ~ 200790 (+) False G91827
TU123620 lncRNA downstream 7612 330469 ~ 331021 (+) True G91862
TU123554 lncRNA downstream 14556 337413 ~ 423652 (+) False G91827
TU123556 lncRNA downstream 19327 342184 ~ 364222 (+) False G91827
TU123625 lncRNA downstream 41553 364410 ~ 447169 (+) False G91866
TU123628 lncRNA downstream 41553 364410 ~ 447169 (+) True G91866
XM_039811808.1 mRNA upstream 113681 141925 ~ 159457 (+) True LOC120565788
XM_039811713.1 mRNA downstream 461342 784199 ~ 808239 (+) True stx6
XM_039811714.1 mRNA downstream 463845 786702 ~ 787874 (+) True LOC120565732
XM_039811715.1 mRNA downstream 463845 786702 ~ 787874 (+) False LOC120565732
XM_039811716.1 mRNA downstream 463845 786702 ~ 787874 (+) False LOC120565732
XM_039811564.1 mRNA downstream 509384 832241 ~ 854498 (+) True wdr18
TU123552 other upstream 117430 154852 ~ 155708 (+) True G91827
TU123666 other downstream 186284 509141 ~ 566466 (+) False G91887
TU123686 other downstream 218834 541691 ~ 542909 (+) True G91897
TU123696 other downstream 257950 580807 ~ 593877 (+) True G91903
TU123859 other downstream 399516 722373 ~ 758976 (+) True G92019
TU123860 other downstream 432738 755595 ~ 758976 (+) False G92019

Expression Profile