RNA id: TU123859


Basic Information

Item Value
RNA id TU123859
length 555
RNA type TUCP
GC content 0.49
exon number 3
gene id G92019
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 722373 ~ 758976 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcaaatggtttgtgggacatggtggccctgaagactggtctcccactatggacatcccacaggctccgggtggattcccctttggaccggtacacaccagccaggtgtgaagtcccatgtatgttcaaatctcttgagcatccacatcactccatcctgagattgaacacctcccgtgtaggtttgtcatttcctgaatcagctggatcaagtcaagagtgaagaaaagaggatgccacatcatggattcttgatatggcatatctcgtgggctctggcatcatgccggtcggtgcttgaatgttgcgcagcgtctcagtattagatggagaccagacttgccaattcttcactgtccattcaatgttaggatggacaggatcttcagtgtcctctccactttcagaggaagggttagaggcactcacagagttggaggacaccagtgaccattttgtcagactccagaaacttgtgtcaccttcagatgagtcctgcagttggctggaagataaaggctccttctctttgctccaggtctttctccttctctag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123853 lncRNA upstream 27623 694433 ~ 694750 (+) True G92015
TU123851 lncRNA upstream 37321 684735 ~ 685052 (+) True G92013
TU123682 lncRNA upstream 117542 520487 ~ 604831 (+) False G91896
TU123683 lncRNA upstream 117542 602785 ~ 604831 (+) True G91896
TU123664 lncRNA upstream 155907 565606 ~ 566466 (+) False G91887
TU123865 lncRNA downstream 6478 765454 ~ 768674 (+) False G92022
TU123866 lncRNA downstream 6478 765454 ~ 768674 (+) False G92022
TU123869 lncRNA downstream 6478 765454 ~ 768674 (+) True G92022
TU123856 lncRNA downstream 10497 769473 ~ 773957 (+) True G92018
TU123874 lncRNA downstream 57606 816582 ~ 818325 (+) True G92027
XM_039811808.1 mRNA upstream 562916 141925 ~ 159457 (+) True LOC120565788
XM_039811713.1 mRNA downstream 25223 784199 ~ 808239 (+) True stx6
XM_039811714.1 mRNA downstream 27726 786702 ~ 787874 (+) True LOC120565732
XM_039811715.1 mRNA downstream 27726 786702 ~ 787874 (+) False LOC120565732
XM_039811716.1 mRNA downstream 27726 786702 ~ 787874 (+) False LOC120565732
XM_039811564.1 mRNA downstream 73265 832241 ~ 854498 (+) True wdr18
TU123696 other upstream 128496 580807 ~ 593877 (+) True G91903
TU123666 other upstream 155907 509141 ~ 566466 (+) False G91887
TU123686 other upstream 179464 541691 ~ 542909 (+) True G91897
TU123592 other upstream 404405 273138 ~ 317968 (+) False G91842
TU123552 other upstream 566665 154852 ~ 155708 (+) True G91827
TU124034 other downstream 409845 1168821 ~ 1170046 (+) True G92146
TU124050 other downstream 443911 1202887 ~ 1204046 (+) True G92157
TU124060 other downstream 461834 1220810 ~ 1224808 (+) False trmt13
TU124057 other downstream 462397 1221373 ~ 1224808 (+) False trmt13
TU124067 other downstream 482411 1241387 ~ 1256194 (+) True G92169

Expression Profile