RNA id: TU123951


Basic Information

Item Value
RNA id TU123951
length 485
lncRNA type sense_over
GC content 0.43
exon number 4
gene id G92076
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1356878 ~ 1407682 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attcgtggggtcccataaccgggagtccagtatatttgtggggtcccgacagctttgtggggcccaaaatgctggacccccccaagtttaaagggctgtttgagggttaagacttggttttaggattagggatagaattaggttatggttagggtgaaggtaagggttaaggttaggcatttagttgtgatggttaaggtgaaggtaagggttaaggttaggcatttagttgtgatggttaagattaggcatttagtggtgatggttaaggttagggtaagggttaagacttggttttaggattagggatagaattaggttatggttaaggttagggtaaggcatctagtggtgatggttaaggttagggtaagggttaaggttaggcatttagtggtgatggttaaggttagggtaagggttaaggttaggcatttagttgtgatggttaagtttagggtaagggttaaggttaggcatttagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123954 lncRNA upstream 29340 1299158 ~ 1327538 (+) True G92079
TU123938 lncRNA upstream 55298 1189789 ~ 1301580 (+) False G92071
TU123944 lncRNA upstream 115514 1216590 ~ 1241364 (+) False G92071
TU123940 lncRNA upstream 118910 1205083 ~ 1237968 (+) False G92071
TU123949 lncRNA upstream 122081 1217304 ~ 1234797 (+) True G92074
TU124095 lncRNA downstream 4800 1412482 ~ 1412871 (+) True G92183
TU123932 lncRNA downstream 11067 1418749 ~ 1648238 (+) False G92070
TU123933 lncRNA downstream 11067 1418749 ~ 1420539 (+) True G92070
TU123934 lncRNA downstream 11067 1418749 ~ 1676140 (+) False G92070
XR_005640235.1 lncRNA downstream 25976 1433658 ~ 1436614 (+) True LOC120565412
XM_039811451.1 mRNA upstream 128199 1222333 ~ 1228679 (+) True trmt13
XM_039811799.1 mRNA upstream 331735 1010747 ~ 1025143 (+) True plppr3b
XM_039812306.1 mRNA upstream 347665 983651 ~ 1009213 (+) True med16
XM_039811565.1 mRNA upstream 401642 886359 ~ 955236 (+) True grin3bb
XM_039811453.1 mRNA downstream 130317 1537999 ~ 1574777 (+) True LOC120565564
XM_039811454.1 mRNA downstream 217892 1625574 ~ 1630680 (+) True LOC120565565
XM_039811455.1 mRNA downstream 228281 1635963 ~ 1637498 (+) True sid1
XM_039811456.1 mRNA downstream 460039 1867721 ~ 1889087 (+) True LOC120565570
XM_039811232.1 mRNA downstream 483872 1891554 ~ 1908999 (+) True serpinc1
TU124067 other upstream 100684 1241387 ~ 1256194 (+) True G92169
TU124060 other upstream 132070 1220810 ~ 1224808 (+) False trmt13
TU124057 other upstream 132070 1221373 ~ 1224808 (+) False trmt13
TU124050 other upstream 152832 1202887 ~ 1204046 (+) True G92157
TU124034 other upstream 186832 1168821 ~ 1170046 (+) True G92146
TU124103 other downstream 56133 1463815 ~ 1535856 (+) False LOC120565410
TU124120 other downstream 171273 1578955 ~ 1910061 (+) True G92201
TU124157 other downstream 289292 1696974 ~ 1804395 (+) True G92234
TU124195 other downstream 459970 1867652 ~ 2000993 (+) True G92264
TU124197 other downstream 459970 1867652 ~ 1996750 (+) False G92264

Expression Profile