RNA id: TU123958


Basic Information

Item Value
RNA id TU123958
length 236
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G92083
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1578519 ~ 1615013 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtatgtgtgtctctgtctctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtcgtgtgtgtgtgtgtgtgtgtgtctcttgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640237.1 lncRNA upstream 83152 1494808 ~ 1495367 (+) True LOC120565414
TU123955 lncRNA upstream 101740 1458163 ~ 1476779 (+) True G92080
XR_005640234.1 lncRNA upstream 110702 1463719 ~ 1467817 (+) True LOC120565410
XR_005640235.1 lncRNA upstream 141905 1433658 ~ 1436614 (+) True LOC120565412
TU123933 lncRNA upstream 157980 1418749 ~ 1420539 (+) True G92070
TU124143 lncRNA downstream 6095 1621108 ~ 1623394 (+) True G92221
TU124150 lncRNA downstream 44785 1659798 ~ 1660366 (+) True G92228
XR_005640239.1 lncRNA downstream 84407 1699420 ~ 1700502 (+) True LOC120565416
TU124172 lncRNA downstream 118553 1733566 ~ 1752952 (+) True G92247
TU124174 lncRNA downstream 128762 1743775 ~ 1777830 (+) True G92248
XM_039811453.1 mRNA upstream 3742 1537999 ~ 1574777 (+) True LOC120565564
XM_039812460.1 mRNA upstream 197605 1322405 ~ 1380914 (+) True LOC120566171
XM_039811451.1 mRNA upstream 349840 1222333 ~ 1228679 (+) True trmt13
XM_039811799.1 mRNA upstream 553376 1010747 ~ 1025143 (+) True plppr3b
XM_039812306.1 mRNA upstream 569306 983651 ~ 1009213 (+) True med16
XM_039811454.1 mRNA downstream 10561 1625574 ~ 1630680 (+) True LOC120565565
XM_039811455.1 mRNA downstream 20950 1635963 ~ 1637498 (+) True sid1
XM_039811456.1 mRNA downstream 252708 1867721 ~ 1889087 (+) True LOC120565570
XM_039811232.1 mRNA downstream 276541 1891554 ~ 1908999 (+) True serpinc1
XM_039811233.1 mRNA downstream 278689 1893702 ~ 1908999 (+) False serpinc1
TU124103 other upstream 42663 1463815 ~ 1535856 (+) False LOC120565410
TU124067 other upstream 322325 1241387 ~ 1256194 (+) True G92169
TU124060 other upstream 353711 1220810 ~ 1224808 (+) False trmt13
TU124057 other upstream 353711 1221373 ~ 1224808 (+) False trmt13
TU124050 other upstream 374473 1202887 ~ 1204046 (+) True G92157
TU124157 other downstream 81961 1696974 ~ 1804395 (+) True G92234
TU124195 other downstream 252639 1867652 ~ 2000993 (+) True G92264
TU124197 other downstream 252639 1867652 ~ 1996750 (+) False G92264
TU124125 other downstream 373795 1988808 ~ 2025931 (+) True LOC120565575
TU124251 other downstream 457169 2072182 ~ 2076104 (+) True G92293

Expression Profile