RNA id: TU123968


Basic Information

Item Value
RNA id TU123968
length 631
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G92093
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 964768 ~ 965650 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGCTGTAACGTTCGTTTCAGAGCACCAGAGGGCAGCAAAGGAAGTCAGGAGACAGCGTAACGAGGCACCCAGATCTGCGTTGTCCTTCGGCCCGGGATATACCGGTCCCATGGAAACCGGGTTTCGGTATCCAACCCTACTAACTGGCTATTACTGGTTACCTTCGTTGTTGGATTGGTTCGATTCAGGAATAAGGAGTGCGACGGTCAGGGTAAGAATACCAgcgtaagccaatcagaggcaaaaTAGGGCAGGACATTCCTTCACCATCCCACTGTACTGGCTTGGTTCTGGTCTGTGTCAGTTATTGAAGTCCTGAAACTGGACCAGACTGAAGTGAAGCAATTTGAACTGGACTGAACAACAACCAGTCTGAACCGGTCGGGACCGGGGGCTGTATGATGCCAGGTTTGGGAGGAAACTGACCGATGAAAACGAAGATCTGGTGGTGAGAATATCTGAGCAGCATGGACACGGAGAGAGtctgaaacacagaaacacgatcatcAGCAGAgtctgaaacacagacacacaatcatcAGCAGAgtctgaaacacagacacacaatcatcAGCAGAGtctgaaacacagaaacacaatcaTCAGCAGAgtctgaaacagaaacacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123925 lncRNA upstream 17055 923297 ~ 947713 (+) True G92066
TU123926 lncRNA upstream 24009 900221 ~ 940759 (+) False G92066
TU123920 lncRNA upstream 104065 860473 ~ 860703 (+) True G92062
TU123876 lncRNA upstream 138722 824574 ~ 826046 (+) True G92029
TU123874 lncRNA upstream 146443 816582 ~ 818325 (+) True G92027
TU123969 lncRNA downstream 3341 968991 ~ 969912 (+) True G92094
TU123970 lncRNA downstream 3341 968991 ~ 1063760 (+) False G92094
TU123971 lncRNA downstream 5223 970873 ~ 971521 (+) True G92095
TU123979 lncRNA downstream 43072 1008722 ~ 1112847 (+) True G92102
TU123991 lncRNA downstream 80013 1045663 ~ 1046099 (+) True G92109
XM_039811565.1 mRNA upstream 9532 886359 ~ 955236 (+) True grin3bb
XM_039811566.1 mRNA upstream 9532 891578 ~ 955236 (+) False grin3bb
XM_039811564.1 mRNA upstream 110270 832241 ~ 854498 (+) True wdr18
XM_039811713.1 mRNA upstream 156529 784199 ~ 808239 (+) True stx6
XM_039812306.1 mRNA downstream 18001 983651 ~ 1009213 (+) True med16
XM_039811799.1 mRNA downstream 45097 1010747 ~ 1025143 (+) True plppr3b
XM_039811451.1 mRNA downstream 256683 1222333 ~ 1228679 (+) True trmt13
XM_039812460.1 mRNA downstream 356755 1322405 ~ 1380914 (+) True LOC120566171
XM_039811453.1 mRNA downstream 572349 1537999 ~ 1574777 (+) True LOC120565564
TU123859 other upstream 205792 722373 ~ 758976 (+) True G92019
TU123860 other upstream 205792 755595 ~ 758976 (+) False G92019
TU123696 other upstream 370891 580807 ~ 593877 (+) True G91903
TU123666 other upstream 398302 509141 ~ 566466 (+) False G91887
TU124034 other downstream 203171 1168821 ~ 1170046 (+) True G92146
TU124050 other downstream 237237 1202887 ~ 1204046 (+) True G92157
TU124060 other downstream 255160 1220810 ~ 1224808 (+) False trmt13
TU124057 other downstream 255723 1221373 ~ 1224808 (+) False trmt13
TU124067 other downstream 275737 1241387 ~ 1256194 (+) True G92169

Expression Profile