RNA id: TU123979


Basic Information

Item Value
RNA id TU123979
length 376
lncRNA type read_through
GC content 0.49
exon number 3
gene id G92102
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1008722 ~ 1112847 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtctgtctctgtgtgtgtgtttgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctctgtgtgtgtgtgtgtgtGTGTCTCTGagagtctgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123924 lncRNA upstream 24677 923297 ~ 984045 (+) False G92066
TU123971 lncRNA upstream 37201 970873 ~ 971521 (+) True G92095
TU123969 lncRNA upstream 38810 968991 ~ 969912 (+) True G92094
TU123968 lncRNA upstream 43072 964768 ~ 965650 (+) True G92093
TU123925 lncRNA upstream 61009 923297 ~ 947713 (+) True G92066
TU123942 lncRNA downstream 15876 1128723 ~ 1192296 (+) True G92071
TU124032 lncRNA downstream 40427 1153274 ~ 1154717 (+) True G92144
TU123962 lncRNA downstream 69699 1182546 ~ 1211478 (+) True G92087
TU123937 lncRNA downstream 76942 1189789 ~ 1217204 (+) False G92071
TU123938 lncRNA downstream 76942 1189789 ~ 1301580 (+) False G92071
XM_039811565.1 mRNA upstream 53486 886359 ~ 955236 (+) True grin3bb
XM_039811566.1 mRNA upstream 53486 891578 ~ 955236 (+) False grin3bb
XM_039811564.1 mRNA upstream 154224 832241 ~ 854498 (+) True wdr18
XM_039811715.1 mRNA upstream 220848 786702 ~ 787874 (+) False LOC120565732
XM_039811451.1 mRNA downstream 109486 1222333 ~ 1228679 (+) True trmt13
XM_039812460.1 mRNA downstream 209558 1322405 ~ 1380914 (+) True LOC120566171
XM_039811453.1 mRNA downstream 425152 1537999 ~ 1574777 (+) True LOC120565564
XM_039811454.1 mRNA downstream 512727 1625574 ~ 1630680 (+) True LOC120565565
XM_039811455.1 mRNA downstream 523116 1635963 ~ 1637498 (+) True sid1
TU123859 other upstream 249746 722373 ~ 758976 (+) True G92019
TU123860 other upstream 249746 755595 ~ 758976 (+) False G92019
TU123696 other upstream 414845 580807 ~ 593877 (+) True G91903
TU123666 other upstream 442256 509141 ~ 566466 (+) False G91887
TU124034 other downstream 55974 1168821 ~ 1170046 (+) True G92146
TU124050 other downstream 90040 1202887 ~ 1204046 (+) True G92157
TU124060 other downstream 107963 1220810 ~ 1224808 (+) False trmt13
TU124057 other downstream 108526 1221373 ~ 1224808 (+) False trmt13
TU124067 other downstream 128540 1241387 ~ 1256194 (+) True G92169

Expression Profile