RNA id: TU123991



Basic Information


Item Value
RNA id TU123991
length 276
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G92109
representative True

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1045663 ~ 1046099 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ACGGTCAGCCAGCTCctcctgcttcattctcctcaggaagtgcagtgtgatcttcagaaatgcctctctgctcctcctctgctcttcatcctcatcctccctctTACTCTCtgagcattctgggtaatctggactcagaaccttctggatcttcttcagctcattcttcacaaaagtgcagatgttctcctccagCATACATATGAagtccaggtgtgtttgatgctgctgggcagactgaccacTGGGTAACTCTGagctctcctggtccactct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU123924 lncRNA upstream 61618 923297 ~ 984045 (+) False G92066
TU123971 lncRNA upstream 74142 970873 ~ 971521 (+) True G92095
TU123969 lncRNA upstream 75751 968991 ~ 969912 (+) True G92094
TU123968 lncRNA upstream 80013 964768 ~ 965650 (+) True G92093
TU123925 lncRNA upstream 97950 923297 ~ 947713 (+) True G92066
TU123999 lncRNA downstream 1437 1047536 ~ 1062632 (+) False G92111
TU123998 lncRNA downstream 4104 1050203 ~ 1062632 (+) True G92111
TU123945 lncRNA downstream 57093 1103192 ~ 1301580 (+) False G92071
TU123953 lncRNA downstream 60050 1106149 ~ 1129822 (+) True G92078
TU123960 lncRNA downstream 65319 1111418 ~ 1211840 (+) True G92085
XM_039811799.1 mRNA upstream 20520 1010747 ~ 1025143 (+) True plppr3b
XM_039812306.1 mRNA upstream 36450 983651 ~ 1009213 (+) True med16
XM_039811565.1 mRNA upstream 90427 886359 ~ 955236 (+) True grin3bb
XM_039811566.1 mRNA upstream 90427 891578 ~ 955236 (+) False grin3bb
XM_039811564.1 mRNA upstream 191165 832241 ~ 854498 (+) True wdr18
XM_039811451.1 mRNA downstream 176234 1222333 ~ 1228679 (+) True trmt13
XM_039812460.1 mRNA downstream 276306 1322405 ~ 1380914 (+) True LOC120566171
XM_039811453.1 mRNA downstream 491900 1537999 ~ 1574777 (+) True LOC120565564
XM_039811454.1 mRNA downstream 579475 1625574 ~ 1630680 (+) True LOC120565565
XM_039811455.1 mRNA downstream 589864 1635963 ~ 1637498 (+) True sid1
TU123859 other upstream 286687 722373 ~ 758976 (+) True G92019
TU123860 other upstream 286687 755595 ~ 758976 (+) False G92019
TU123696 other upstream 451786 580807 ~ 593877 (+) True G91903
TU123666 other upstream 479197 509141 ~ 566466 (+) False G91887
TU124034 other downstream 122722 1168821 ~ 1170046 (+) True G92146
TU124050 other downstream 156788 1202887 ~ 1204046 (+) True G92157
TU124060 other downstream 174711 1220810 ~ 1224808 (+) False trmt13
TU124057 other downstream 175274 1221373 ~ 1224808 (+) False trmt13
TU124067 other downstream 195288 1241387 ~ 1256194 (+) True G92169

Expression Profile