RNA id: TU124050


Basic Information

Item Value
RNA id TU124050
length 1082
RNA type TUCP
GC content 0.52
exon number 2
gene id G92157
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1202887 ~ 1204046 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGGCGCCTTTACTTAAAGAGTCTTTCTTCAGAAGAGTCCCGTCTTTCTTCAGAGTCCCGCTCTTCTTCTTCACTTCTGCACTCAACACTCTTTCACTCGCCGTCTTCTTCACTTCTTTAACGGCTGCTTTGGCTGGTTTCTTCTCCTCCGTTTTCACATCCTTCTTCGGGTCTTTCTTTGGTTCGGCTTTGATGTCTTTCTTTGGTTTGGTGATAAAAGTTTCTTTCTTTACCggttctctcttcttctctgtgcTCTCGTCTTTCTTTACCggttctctcttcttctctgtgcTCTCGTCTTTCTTTACCggttctctcttcttctctgtgCTCTCGTCTTTCTTTATCagttctctcttcttctctgcgCTCTCGTCTTTCTTTATCagttctctcttcttctctgcgCTCTCGTCTTTCTTTATCAGTTCTCTCTTCTTCTCGGCGCTCTCGTCTTTCTTTACCAGTTCTCTCTTCTTCTCGGCGCTCTCGTCTTTCTTTACCAGTTCTCTCTTCTTCTCGGCGCTCTCGTCTTTCTTTACAACGGCGATCTTCTCgtccttctttttctcttcctttgACAAGTCTTTCTTTGGATTTGGAGCCAGTTTCTCTGCAGCTTTCGGCAGCCTTGTTTTAGCGTCTGCCTCCTTTATCTTCATCTGTTTCTCTTCCCCGTCTTTCGGCGCGGCGTCTCCGGCTGCCTTGGGCTTCGTCTTCACTTCTTGTTTCTTCACTTCCTGCCGTGGCGGCTTGTCTTTCTGCGCGGCGGCGCCACTGCTGGCCCTCGAGTCCTTCGACTGGGACTTGAGGCTCTCCCGACTCTCGGCTCGCCTCGGTTGCTTCTCGGTGGCCGTCCTGGGCGTTTCCAGGTCTCTGGAACACACGGTCGGGTGCTTGAGGAACTCCAGATGTTGGAGCTTATCGAGCCCGTCCAGGATCTGGTTCTGGGGCGTGCAGCCCGGGAACAGAACCCGGATGATCTTCTCCACCGGGCTGGCGGGATGCCAGACCAGCAGAGCACAGATGGACACCAGGCACGGCAACTGGAGGCCCGAGCCCGTGGGCCAGGTCTGCGT

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124045 lncRNA upstream 5170 1197258 ~ 1197717 (+) True G92154
TU123942 lncRNA upstream 10591 1128723 ~ 1192296 (+) True G92071
TU124032 lncRNA upstream 48170 1153274 ~ 1154717 (+) True G92144
TU123953 lncRNA upstream 73065 1106149 ~ 1129822 (+) True G92078
TU123979 lncRNA upstream 90040 1008722 ~ 1112847 (+) True G92102
TU123940 lncRNA downstream 1037 1205083 ~ 1237968 (+) False G92071
TU123944 lncRNA downstream 12544 1216590 ~ 1241364 (+) False G92071
TU123949 lncRNA downstream 13258 1217304 ~ 1234797 (+) True G92074
TU123943 lncRNA downstream 14442 1218488 ~ 1219449 (+) False G92071
TU124063 lncRNA downstream 26071 1230117 ~ 1230727 (+) True G92166
XM_039811799.1 mRNA upstream 177744 1010747 ~ 1025143 (+) True plppr3b
XM_039812306.1 mRNA upstream 193674 983651 ~ 1009213 (+) True med16
XM_039811565.1 mRNA upstream 247651 886359 ~ 955236 (+) True grin3bb
XM_039811566.1 mRNA upstream 247651 891578 ~ 955236 (+) False grin3bb
XM_039811564.1 mRNA upstream 348389 832241 ~ 854498 (+) True wdr18
XM_039811451.1 mRNA downstream 18287 1222333 ~ 1228679 (+) True trmt13
XM_039812460.1 mRNA downstream 118359 1322405 ~ 1380914 (+) True LOC120566171
XM_039811453.1 mRNA downstream 333953 1537999 ~ 1574777 (+) True LOC120565564
XM_039811454.1 mRNA downstream 421528 1625574 ~ 1630680 (+) True LOC120565565
XM_039811455.1 mRNA downstream 431917 1635963 ~ 1637498 (+) True sid1
TU124034 other upstream 32841 1168821 ~ 1170046 (+) True G92146
TU123859 other upstream 443911 722373 ~ 758976 (+) True G92019
TU123860 other upstream 443911 755595 ~ 758976 (+) False G92019
TU123696 other upstream 609010 580807 ~ 593877 (+) True G91903
TU123666 other upstream 636421 509141 ~ 566466 (+) False G91887
TU124060 other downstream 16764 1220810 ~ 1224808 (+) False trmt13
TU124057 other downstream 17327 1221373 ~ 1224808 (+) False trmt13
TU124067 other downstream 37341 1241387 ~ 1256194 (+) True G92169
TU124103 other downstream 259769 1463815 ~ 1535856 (+) False LOC120565410
TU124120 other downstream 374909 1578955 ~ 1910061 (+) True G92201

Expression Profile