RNA id: XM_039811456.1


Basic Information

Item Value
RNA id XM_039811456.1
length 3439
RNA type mRNA
GC content 0.61
exon number 18
gene id LOC120565570
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1867721 ~ 1889087 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTTGCTTCGCCCCCGCCAGTTGGCTGTAGAAACAGCGCCATTATCAAACAGCGTTCATCTTGTTGTTCTTTTCGGGTTGTTTACGGACAAACTTTCATAAATAGGTTCAGATAAACGGAGGTAAACTCAAAGTTTGTGACTTTATTAGATGTTTAGTTATCGTCCGGATGACGCGAGCTTCGTCGCATGTGAAGCTAACGGAGGGAGCTAACGAAGCTAACGGAGGTAGCTAACGGGGCTAACTTGTAGCAGTTGTAAGCTGAACTCTCGAGCCGCGGTGTTTCCTGCGTTGAGTGTCCGTTGGTAGAGTTGCCTTGTCGGCCACATCAGGGATGAGTTGCCCGGTGAACCTCCAGGATCTTCCGTCCGGAGTGTTTGAAACGGTTTTTACTCCAGAAAACGTGAGAGTAAGGACCATGAACTCTCTGACTCCGCTCAGCTTCCCCAAAACCAGATCAGCTCTGTGGGACGGCAGCCCTGCAGGAGACAAGCTCCGCCTCCAGCTCGGCactcacagGAAGCCTCGGCTGGTGCTGctggagaaagctctgcgtctGGCTCAGCGTCACGCCCGTCACAGCAACAAGCCCCGCCTCCTGTGTTTCCTCCTGGGCTCGCTGTGTGTCGACGCAGATGAGGGAGGGGTCACTGTGACTCTGGACCGGTGACCCGGTCGGGACCAGCCGAGCCTCGGGCGGGGTCCCCACCCGCTGCTGCCCGGAGACGTCCTGGTTCCCTGTCTGTTCTCCTCAGAGACTGTCCCCTCGTCTGACGCCGTCGTCCAATCAGAGGCTGAGCTGCATCACTGCTTCAAGgtgTTGCAGCAGTGCGTGAGCGGCAGACAGTCTCTGGACCTGTCTCAGCTGTTGAGGGTCAGAGGTCGGGTGGTCTGCTGTCAGCAGTCTGACTCCGCGGCGTTCTCCCTCAGCTGGGCGGCCGTGTGTCCGTCTGTCAGCGTGGAGGTCCAGCCGGTCCGAGCCGTCCCCGTCATCCCCACGGCTCTGCTGAGGAGTCTGACCGGCGCCACCCGCCCACCGCTGCACGCCAACCGGCAGAGAGGgttTCTGACCATGGATCAGACCaggaagctgctgctgctgctggagtctGATCCTAAAGCCCTCCAACCGCCGCTGGTCGGACTCTGGCTGAGTGGAGTCGTTCACGTCTCCAACCCTCAGGTGTGGGCCTGGTGTCTGAGGTTCCTGTGTAGCTCGGGCCTCCCCAGGACAGttCTGTCTGAGAGTGGCTGTTTCCTCCTGGTCCTGTTCGGTTCGACCCACCGAGCTCCTCAGTTCTTCCAGTGTCGAGGATCAGCATCTGGACCACAGCTGGACTACCGCCTGCTGACCGCCTCCCAGTGCGTCACACTCTACCAGCAGGCGGTCTCGGTGGAGGGTCAGACTCTGCGCTGTGAGCTCGGCTCAGAGGATCACAGCCGCCAGACGGAGGTCTTCAGAGAGGCTCAGACCTCCTTCAACAGAACTTGTCTCCCCCGCCCGTCCCCGAGCCCCCACCTCCCCGCTCAGCAGGCTCGCAGAGTTCAGCCGTCTGTTCCTGAACTTTCTCTGCTGATTGACAGCGCTGCCGTCTCAATCACAACAGCTGGCAGGAGGCGGCCCGCCCcaggcctgctgctgctgctgacaggaAGTCCGCCCCTCCAACACCTACGCTGCTCCCAtccccaccacctcctcctcctcctcccatcacCATCCACCTGTTTCTGTTCCTCCACCCTCCATCCATGGCtctgccccccctcctccctgtcCCTGCAGCcaccctccccccaccccacgGTGTGGAGactcctctcttccctccccTCGGTGTGGGagactcctcctctcttccctctccaCGGTGTGGAGACTCCTCCCCTCACGGTGTGGAgactccccctctcttccctccctcGGTGTGGAGAacctccctctcttccctcccCTCGGTGTGGGgaactcctcctcttcctcacccgTCCCATCCCGCAGCAGCAGCCTCTGTGTCTTCCTCCTGTGTGCATCATCAAGGGGGGAGGAGTCATCCCATCTGACACATATAACAGCTGCTCCTCCATCAGGGACCGACAGCTCCGCCTCCTGCAGGAGCAGGTCCAGATGTTGCTGGAGGCTCAGAGGAAACTTCAGTCGTCGTCCGGCCAGCAGGTCGATACTCAGACACCCAAAAGCACCGCCAGCATCGCCGTGGGAACAGGTGCCAGTTTGTTCTGGGGGTCTCCGGTCCAGTTCCCCCTCCCACATCAGGAAGAACAGGCCCCTCGCCCTTCCTCACAGGCCGACCTGTCCGTCAACGGGCCTGGGGGCGGAGCCGAGAACAGTGACATCACAGCTCAAGAGGCTGCCTGCTCCCCCTCTGCTCAGCACAGCGTTAGCGGGCTGCAGAGTCCCGTCCTGGGAGAGAGTGTGAGCATGTACAGACCTGCAGACGACCAGCAGAGCTTCTTTAACAACCTGAtgACTCAGGTGACCAGTCGTCTCCAGGAGTCAGAGAGTAAACAGGaagtggaggaagaagaagaggaggaggagtccCGGAGGCGGAGCCTGTCTGTGGTTTCGGCCCAGTCGTCCCGGAGGAGGCGGAGCTGTGGAGGAGACTCGGTGCTCAGCGCCACCGTGaggcagctgcagcagctcggAGTCAACGTGGAAGAAGATCTGAGCGAGGCGGACCGGAGAAACCAGCAGACTATAGAGAGCAGCAGCACTCTGGCGGGTATCAACCCAGCGGCTGTTCTGTCCAGACTGAGCGTGTCCGAGTCCTCGGCGAGCTCTCTGTTCCCCGGTGCCAGCGTGGACCTGAGTCTGGAGGCCAACGCCATCGCGCTGCGCTACCTGAGCGACTCCCAGCTCAGCCGGCTGTCTCTGGGAGGCCACGCCCCCCAAACAGTCCCCGCCTCCGCCTCCAGCTCCAACCACTCCCTGCTGTCGCCTAGCAACATGTCCCTGGCCACCAGGAAGTACATGCGGCGCTACGGCCTCATCGAGGAAGAGGACGgcgaagaggaagaagaagaagtagttCGCCAGCCGTTCCTCCCACAGAGTCAGCTGATCCGCGACCTGCAGCCCAAAATGCCGCTGTACCCCGGCGGGAACAAAGCCAACGGCGCCAACAAGGAGAACCGGTCCAACCGGCATCCAGCGTCAGTCAGGACCGGCAGCCGCCAGACGGAGGGATCGGTAGGGAACATCCTGGACCTGAGCCGCCTCAGGCAGCTCCCCAAACTCTTCTGACTCCACATCCTGGACCTGAGCCGCCTCAGACAGCTGCCCAAACTCTTCTGACTCCACATCCTGGACCTGAGCCGCCTCAGACAGCTCCCCAAACTCTTCTGACTCCACATCCTGGACCTGGGCCGCCTCAGACAGCTGCCCAAACTCTTCTGACTCCACATCCTGGATCTGA

Function

GO: NA

KEGG:

id description
K16724 STIL; SCL-interrupting locus protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124185 lncRNA upstream 36864 1804469 ~ 1830857 (+) True G92257
TU124174 lncRNA upstream 89891 1743775 ~ 1777830 (+) True G92248
TU124172 lncRNA upstream 114769 1733566 ~ 1752952 (+) True G92247
XR_005640239.1 lncRNA upstream 167219 1699420 ~ 1700502 (+) True LOC120565416
TU123934 lncRNA upstream 191581 1418749 ~ 1676140 (+) False G92070
TU124117 lncRNA downstream 20145 1909232 ~ 1910061 (+) False G92201
TU124121 lncRNA downstream 20145 1909232 ~ 1910061 (+) False G92201
TU124211 lncRNA downstream 63899 1952986 ~ 1953927 (+) True G92274
TU124212 lncRNA downstream 70765 1959852 ~ 1960134 (+) True G92275
TU124213 lncRNA downstream 70765 1959852 ~ 1960134 (+) False G92275
XM_039811455.1 mRNA upstream 230223 1635963 ~ 1637498 (+) True sid1
XM_039811454.1 mRNA upstream 237041 1625574 ~ 1630680 (+) True LOC120565565
XM_039811453.1 mRNA upstream 292944 1537999 ~ 1574777 (+) True LOC120565564
XM_039812460.1 mRNA upstream 486807 1322405 ~ 1380914 (+) True LOC120566171
XM_039811451.1 mRNA upstream 639042 1222333 ~ 1228679 (+) True trmt13
XM_039811232.1 mRNA downstream 2467 1891554 ~ 1908999 (+) True serpinc1
XM_039811233.1 mRNA downstream 4615 1893702 ~ 1908999 (+) False serpinc1
XM_039811459.1 mRNA downstream 91751 1980838 ~ 1993868 (+) True LOC120565574
XM_039811460.1 mRNA downstream 105732 1994819 ~ 2024965 (+) False LOC120565575
XM_039811243.1 mRNA downstream 161875 2050962 ~ 2071903 (+) False dph5
TU124157 other upstream 63326 1696974 ~ 1804395 (+) True G92234
TU124103 other upstream 331865 1463815 ~ 1535856 (+) False LOC120565410
TU124067 other upstream 611527 1241387 ~ 1256194 (+) True G92169
TU124060 other upstream 642913 1220810 ~ 1224808 (+) False trmt13
TU124057 other upstream 642913 1221373 ~ 1224808 (+) False trmt13
TU124125 other downstream 99721 1988808 ~ 2025931 (+) True LOC120565575
TU124251 other downstream 183095 2072182 ~ 2076104 (+) True G92293
TU124333 other downstream 477033 2366120 ~ 2368316 (+) False G92333
TU124352 other downstream 482901 2371988 ~ 2380260 (+) False reep6
TU124353 other downstream 482901 2371988 ~ 2380260 (+) True reep6

Expression Profile