RNA id: XR_005640253.1


Basic Information

Item Value
RNA id XR_005640253.1
length 1216
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC120565459
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 3540034 ~ 3595388 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCCTATCCAGTCTCTACCCTATCAGGTTTCTACCCTATCCAGGTTTCTACCCTATCCAGTCTCTACCCTATCAGGTTTCTACCCTATCCAGTCTCTACCCTATCAGGTTTCTACCCTATCCAGTCTCTACCTTATCTAGTCTCTACCCTATCCAGTCTCTACCTTATCCAGTCTCTACCTTATCCAGTCTCTACCTTATCTAGTCTCTACCCTATCCAGTCTCTACCTTATCCAGTCTCTACCCTATCCAGTCTCTACCCTATCCAGCCTCTACCCTATCCGGTCTCTACCCTAACCAGTCTCTACCTTAACTAGTCTCTACCTTATCCAGTCTCTACCTTATCTAGTCTCTACCCTATCCAGTCTCTACCCTATCCAGTCTCTACCTTATCTAGTCTCTACCCTATCCAGTCTCTACCCTATCCAGTCTCTACCCTATCCAGTCTCTACCCTAACCAGTCTCTACCCTAACCAGTCTCTACCCTATCTAGTCTCTACCCTATCCAGTCTCTACCCTATCCAGTCTCTACCCTATCCAGTCTCTACCCTATCCAGTCTCTACCCTAACCAGTCTCTACCCTAACCAGTCTCTACCCTATCCAGTCTCTACCCTATCCAGTCTCTACCCTAACCAGTCTCTACCCTAACCAGTCTCTACCCTATCCAGTCTCTACCCTATCCAGTCTCTACCTTATCTAGTCTCTACCCTATCCAGCCTCTACCCTATCCAGCCTCTACCCTATCCGGTCTCTACCCTAACTAGTCTCTACCTTAACTAGTTTCTACCTTAACTAGTTTCTACCCTAACCGGTCTCTACCCTAACCGGTCTCTTCCCTATCCAGTCTCTTCCCTATCCAGTCTCTACCCTAACCAGTCTCTACCCTAACCAGTCTCTACCTTTCTAGTCTCTACCTTTCCAGCCTCTACCCTATCCGGTCTCTACCCTAACTAGTCTCTACCTTAACTAGTTTCTACCTTAACTAGTTTCTACCCTATCCAGTCTCTACCCTATCCAGTCTCTACCTTATCTAGTCTCTACCTTATCCAGTCTCTACCCtatccaGTTTCTACCCTATCCAGTCTCTACCCTATCAGGTTTCTACCCTATCCAGTCTCTACCCTATCAGGTTTCTACCCTATCCAGGTTTCTACCCTATCCAGTCTCTACCCTATCAGGTTTCTACCCTATCCAGTCTCTACCCTATCCAGTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125150 lncRNA upstream 12188 3496835 ~ 3563459 (+) False G92845
TU125159 lncRNA upstream 12188 3496835 ~ 3563459 (+) False G92845
TU125149 lncRNA upstream 12188 3561035 ~ 3563459 (+) False G92845
TU125157 lncRNA upstream 12188 3561035 ~ 3563459 (+) False G92845
TU125143 lncRNA upstream 12188 3562140 ~ 3563459 (+) False G92845
TU125182 lncRNA downstream 9517 3602367 ~ 3619368 (+) True G92853
TU125215 lncRNA downstream 9939 3602789 ~ 3603330 (+) True G92878
TU125216 lncRNA downstream 14461 3607311 ~ 3613096 (+) True G92879
TU125179 lncRNA downstream 27217 3620067 ~ 3625935 (+) True G92850
TU125220 lncRNA downstream 51439 3644289 ~ 3647676 (+) True G92881
XM_039811502.1 mRNA upstream 1498 3217726 ~ 3574149 (+) True LOC120565597
XM_039811258.1 mRNA upstream 227431 3337832 ~ 3348216 (+) True LOC120565455
XM_039811247.1 mRNA upstream 573108 2999620 ~ 3002539 (+) True LOC120565438
XM_039811246.1 mRNA upstream 716529 2845744 ~ 2859118 (+) True LOC120565437
XM_039811225.1 mRNA upstream 734788 2821642 ~ 2840859 (+) True LOC120565422
XM_039812269.1 mRNA downstream 37334 3630184 ~ 3633365 (+) True LOC120566051
XM_039812272.1 mRNA downstream 37334 3630184 ~ 3633365 (+) False LOC120566051
XM_039812271.1 mRNA downstream 37334 3630184 ~ 3633365 (+) False LOC120566051
XM_039811503.1 mRNA downstream 122069 3714919 ~ 3823782 (+) True frem1b
XM_039811967.1 mRNA downstream 234013 3826863 ~ 3854810 (+) True LOC120565880
TU125125 other upstream 85287 3485779 ~ 3490360 (+) True G92838
TU125102 other upstream 208918 3351767 ~ 3366729 (+) True G92826
TU125014 other upstream 443443 3125889 ~ 3132204 (+) True G92782
TU124988 other upstream 481237 3011766 ~ 3094410 (+) True G92773
TU125177 other downstream 8128 3600978 ~ 3606825 (+) True G92848
TU125669 other downstream 603974 4196824 ~ 4217826 (+) True G93150
TU125644 other downstream 692052 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other downstream 697491 4290341 ~ 4293890 (+) False LOC120565391
TU125908 other downstream 1118711 4711561 ~ 4713185 (+) False trmt1l

Expression Profile