RNA id: TU125934


Basic Information

Item Value
RNA id TU125934
length 242
lncRNA type intronic
GC content 0.54
exon number 2
gene id G93349
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4939148 ~ 4939410 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caggttcttagtgagctaacgttgatatgctaaagtaggccaaagttcagccatagctacgttgttagcttctagcaaaaaggcaggccctgttaggcactgctaggccctgttaggcactactaggcactgttaggccccGTTAGGCACTACTAGGCCCCGTTAGGCACtactaggccctgTAGGCACTGCAAGGCCCTGTAGGCACTGCaaggccctgttaggcactgcaaggccctgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125930 lncRNA upstream 45442 4893318 ~ 4893706 (+) True G93345
TU125920 lncRNA upstream 133916 4798411 ~ 4805232 (+) True G93335
TU125901 lncRNA upstream 180088 4727668 ~ 4759060 (+) True G93323
TU125935 lncRNA downstream 4235 4943645 ~ 4943947 (+) True G93350
TU125937 lncRNA downstream 4235 4943645 ~ 4943947 (+) False G93350
TU126066 lncRNA downstream 119196 5058606 ~ 5100316 (+) True G93431
TU126067 lncRNA downstream 122917 5062327 ~ 5100734 (+) True G93432
TU126108 lncRNA downstream 388575 5327985 ~ 5328233 (+) True G93448
XM_039812521.1 mRNA upstream 65792 4852948 ~ 4873356 (+) True mettl11b
XM_039812507.1 mRNA upstream 154997 4714655 ~ 4784151 (+) True niban1a
XM_039811513.1 mRNA upstream 225915 4685224 ~ 4713233 (+) True trmt1l
XM_039811612.1 mRNA upstream 277711 4657761 ~ 4661437 (+) False LOC120565686
XM_039812509.1 mRNA downstream 27149 4966559 ~ 5000440 (+) True prrx1b
XM_039812511.1 mRNA downstream 27149 4966559 ~ 5000440 (+) False prrx1b
XM_039812510.1 mRNA downstream 27149 4966559 ~ 5000440 (+) False prrx1b
XM_039812512.1 mRNA downstream 27150 4966560 ~ 5000440 (+) False prrx1b
XM_039812514.1 mRNA downstream 27150 4966560 ~ 5000440 (+) False prrx1b
TU125908 other upstream 225963 4711561 ~ 4713185 (+) False trmt1l
TU125644 other upstream 641738 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 645258 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 721322 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 1332323 3600978 ~ 3606825 (+) True G92848
TU126315 other downstream 1095959 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 1262675 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 1415487 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 2410400 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 2959262 7898672 ~ 7905247 (+) False LOC120565614

Expression Profile