RNA id: TU126885


Basic Information

Item Value
RNA id TU126885
length 1135
RNA type TUCP
GC content 0.44
exon number 6
gene id LOC120565614
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7896145 ~ 7905247 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tatttttttattttttttacaccaaaTTACATTACCTGACATTTTTAGGCACAAATGACTTGCAGTTGTTCAGATTTTAAATCTTGATGCAGTCTGTCCACACTGCACATAACAGCCATGAGATGAGGAGGTAGATGGCAAATGTACAAGATTTGAAATGACAGAGCTACAAAGAACATTGCACATTTAATCTTTACAAAGTAAAGGATAAATTGGTTTTGACTTCAAATCATTTTCTTTAAGGATGTTGGCGCTAACAGCATTCTGCAAGACATTGCTCGGGCCCGGGAGAACATCCAGAAATCTCTAGCAGGAagcagcagcagtgcaGCTGATCAAGGAGAAATCATCTGTCGCATAAAGAGCCTGGAGCTGGAGAACCACAGCTTACACAAAGTGGTGGATGATTTGAGGGCTGCACTTTCCAAACTGGAATGTCGGGTATCCGTTCTGGAGAAATCTCCTGCAGCTGTGACCCCTGTTACCACTCCTTCAGTACCCTACACAAATGGCACTACTGTCCAGCAGAAGACCAGCGCCCCGGTtaaagatgaggaggaagatgatgatgatgatattgaccTGTTTGGTAGTGATGATGACGAAGAGGCAGATAAACTCAAAGAGCAGAGGTTGAAGGAGTATGCAGAGAAGAAGGCCAAGAAGCCAGGCATCATCGCCAAGTCTTCCATCTTATTGGATGTCAAACCTTGGGACGATGAAACTGACATGGTGAAGCTGGAGGAGTGTGTGCGCTCGGTGCAGGCGGACGGCCTGTTATGGGGCACGTCCAAACTGGTTCCTGTCGGTTACGGCATCAAAAAGCTCCAGATCGCATGTGTGGTGGAGGACGACAAGGTGGGAACGGACATGTTAGAGGAAGAGATCACCAAGTTCGAGGACTATATCCAGAGTGTTGACGTAGCAGCTTTCAACAAGATCTGATTCcagtgtgtctctttgtgtctttcgTCACGCCTTGTTTCTCTGCTGATTGTGTCAAtggttaataaaaacaaactccTGCACTTGTTTAATGTGTTCTTGTCCTATTTTCTTGTCAGATAAATACTTACCTCTTGTGGGACACGCAGATAGTTTGGGTTTAATTTGTTGAGATGAAGCAATTCTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640303.1 lncRNA upstream 2954 7892224 ~ 7895718 (+) True LOC120565893
TU126854 lncRNA upstream 14844 7878919 ~ 7883828 (+) False LOC120565294
TU126855 lncRNA upstream 14844 7880538 ~ 7883828 (+) False LOC120565294
TU126802 lncRNA upstream 283245 7557254 ~ 7615427 (+) True G93986
TU126801 lncRNA upstream 373329 7524990 ~ 7525343 (+) True G93985
TU126892 lncRNA downstream 48168 7953415 ~ 7955102 (+) True G94056
TU126896 lncRNA downstream 86041 7991288 ~ 7991555 (+) True G94057
TU126898 lncRNA downstream 197746 8102993 ~ 8103363 (+) True G94059
TU126899 lncRNA downstream 198243 8103490 ~ 8103804 (+) True G94060
TU126907 lncRNA downstream 245215 8150462 ~ 8150870 (+) True G94062
XM_039810957.1 mRNA upstream 8495 7880460 ~ 7890177 (+) True LOC120565294
XM_039810958.1 mRNA upstream 24686 7868591 ~ 7873986 (+) True LOC120565295
XM_039810959.1 mRNA upstream 24686 7868605 ~ 7873986 (+) False LOC120565295
XM_039811558.1 mRNA upstream 30944 7862214 ~ 7867728 (+) True LOC120565646
XM_039810225.1 mRNA upstream 293042 7603460 ~ 7605630 (+) True LOC120564954
XM_039812447.1 mRNA downstream 303206 8208453 ~ 8214500 (+) True rgs4
XM_039810246.1 mRNA downstream 1116270 9021517 ~ 9033680 (+) True LOC120564973
XM_039810130.1 mRNA downstream 1152094 9057341 ~ 9062036 (+) True LOC120564878
XM_039812316.1 mRNA downstream 1161931 9067178 ~ 9070676 (+) True LOC120566074
XM_039812315.1 mRNA downstream 1161935 9067182 ~ 9070676 (+) False LOC120566074
TU126750 other upstream 548085 7349810 ~ 7350587 (+) True G93938
TU126420 other upstream 1530318 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 1684655 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 1858553 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 3185487 4711561 ~ 4713185 (+) False trmt1l
TU126919 other downstream 332123 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 332123 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 1241915 9147162 ~ 9159695 (+) True G94199
TU127128 other downstream 1647049 9552296 ~ 9557568 (+) True G94239
unassigned_transcript_387 other downstream 1667051 9572298 ~ 9572369 (+) True trnah-gug_12

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_08007965_08016092.mRNA True 2704 mRNA 0.48 8 CI01000029 8007055 ~ 8016149 (+)