RNA id: TU126899


Basic Information

Item Value
RNA id TU126899
length 315
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G94060
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 8103490 ~ 8103804 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATCTTTTCTTGGAGGGGGACCATGACAGAGTGACAGAAGAGTCTGCCAGTGGAGTACTTTTACCACCCATCCAGTGCCCTCTGAGGCTGCAGACTATGGCAGAACTGAGGGCAGCCATTTACCCTATGACTAACTCCTAGTACAATGGCGGATAGCTTTGCAAGACTGCACTTAACTATGTGATTCTTCACACATAAACATGGCAGGATAACACAGGAAAAccattttgttgtttaaaatgaCACATACCACTACTACTTTATATGTAGTACTGATTTTAATCCTTaacagtttttgaaatgacatgcATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126898 lncRNA upstream 127 8102993 ~ 8103363 (+) True G94059
TU126896 lncRNA upstream 111935 7991288 ~ 7991555 (+) True G94057
TU126892 lncRNA upstream 148388 7953415 ~ 7955102 (+) True G94056
XR_005640303.1 lncRNA upstream 207772 7892224 ~ 7895718 (+) True LOC120565893
TU126854 lncRNA upstream 219662 7878919 ~ 7883828 (+) False LOC120565294
TU126907 lncRNA downstream 46658 8150462 ~ 8150870 (+) True G94062
TU126910 lncRNA downstream 55799 8159603 ~ 8160539 (+) True G94064
TU126914 lncRNA downstream 72465 8176269 ~ 8178483 (+) True G94068
TU126921 lncRNA downstream 133566 8237370 ~ 8286436 (+) False G94073
TU126923 lncRNA downstream 175000 8278804 ~ 8279972 (+) True G94075
XM_039811516.1 mRNA upstream 198344 7896145 ~ 7905146 (+) True LOC120565614
XM_039810957.1 mRNA upstream 213313 7880460 ~ 7890177 (+) True LOC120565294
XM_039810958.1 mRNA upstream 229504 7868591 ~ 7873986 (+) True LOC120565295
XM_039810959.1 mRNA upstream 229504 7868605 ~ 7873986 (+) False LOC120565295
XM_039811558.1 mRNA upstream 235762 7862214 ~ 7867728 (+) True LOC120565646
XM_039812447.1 mRNA downstream 104649 8208453 ~ 8214500 (+) True rgs4
XM_039810246.1 mRNA downstream 917713 9021517 ~ 9033680 (+) True LOC120564973
XM_039810130.1 mRNA downstream 953537 9057341 ~ 9062036 (+) True LOC120564878
XM_039812316.1 mRNA downstream 963374 9067178 ~ 9070676 (+) True LOC120566074
XM_039812315.1 mRNA downstream 963378 9067182 ~ 9070676 (+) False LOC120566074
TU126885 other upstream 198243 7898672 ~ 7905247 (+) False LOC120565614
TU126750 other upstream 752903 7349810 ~ 7350587 (+) True G93938
TU126420 other upstream 1735136 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 1889473 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 2063371 6035369 ~ 6040119 (+) False G93613
TU126919 other downstream 133566 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 133566 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 1043358 9147162 ~ 9159695 (+) True G94199
TU127128 other downstream 1448492 9552296 ~ 9557568 (+) True G94239
unassigned_transcript_387 other downstream 1468494 9572298 ~ 9572369 (+) True trnah-gug_12

Expression Profile