RNA id: TU126910


Basic Information

Item Value
RNA id TU126910
length 937
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G94064
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 8159603 ~ 8160539 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gatatgtttatttgtgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcttgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcgattttggtttcatctgaccacagcaccttcttccacatgtttggtgtgtctcccaggtggcttttggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcagtatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctcattgtatgagctgaaagtttagagggacggccgggtcttcgtagatttgtagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttctccacaacagtatctcggacctgcctggtgttttccttgttcttcatgatgctctctgcgctttacacggacctctgagactatcacagagcaggtgcatttatacggagacttgattacacacagctggattctatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctg

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126907 lncRNA upstream 8733 8150462 ~ 8150870 (+) True G94062
TU126899 lncRNA upstream 55799 8103490 ~ 8103804 (+) True G94060
TU126898 lncRNA upstream 56240 8102993 ~ 8103363 (+) True G94059
TU126896 lncRNA upstream 168048 7991288 ~ 7991555 (+) True G94057
TU126892 lncRNA upstream 204501 7953415 ~ 7955102 (+) True G94056
TU126914 lncRNA downstream 15730 8176269 ~ 8178483 (+) True G94068
TU126921 lncRNA downstream 76831 8237370 ~ 8286436 (+) False G94073
TU126923 lncRNA downstream 118265 8278804 ~ 8279972 (+) True G94075
TU127007 lncRNA downstream 454372 8614911 ~ 8615634 (+) True G94151
TU127009 lncRNA downstream 492517 8653056 ~ 8653424 (+) True G94153
XM_039811516.1 mRNA upstream 254457 7896145 ~ 7905146 (+) True LOC120565614
XM_039810957.1 mRNA upstream 269426 7880460 ~ 7890177 (+) True LOC120565294
XM_039810958.1 mRNA upstream 285617 7868591 ~ 7873986 (+) True LOC120565295
XM_039810959.1 mRNA upstream 285617 7868605 ~ 7873986 (+) False LOC120565295
XM_039811558.1 mRNA upstream 291875 7862214 ~ 7867728 (+) True LOC120565646
XM_039812447.1 mRNA downstream 47914 8208453 ~ 8214500 (+) True rgs4
XM_039810246.1 mRNA downstream 860978 9021517 ~ 9033680 (+) True LOC120564973
XM_039810130.1 mRNA downstream 896802 9057341 ~ 9062036 (+) True LOC120564878
XM_039812316.1 mRNA downstream 906639 9067178 ~ 9070676 (+) True LOC120566074
XM_039812315.1 mRNA downstream 906643 9067182 ~ 9070676 (+) False LOC120566074
TU126885 other upstream 254356 7898672 ~ 7905247 (+) False LOC120565614
TU126750 other upstream 809016 7349810 ~ 7350587 (+) True G93938
TU126420 other upstream 1791249 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 1945586 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 2119484 6035369 ~ 6040119 (+) False G93613
TU126919 other downstream 76831 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 76831 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 986623 9147162 ~ 9159695 (+) True G94199
TU127128 other downstream 1391757 9552296 ~ 9557568 (+) True G94239
unassigned_transcript_387 other downstream 1411759 9572298 ~ 9572369 (+) True trnah-gug_12

Expression Profile