RNA id: TU126914


Basic Information

Item Value
RNA id TU126914
length 1976
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G94068
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 8176269 ~ 8178483 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

catattaggctttttccctttcctttattgtgttatatatctttttttgtgcatgttataggtttacaaagtgaaaaagcctaaagtccaccccaaagggacttaccatctccaaaaagctctattgtagtccagcctttacttctgttaTAATGTGCCTGCTCTATCTAACACACGTAAgggctgcagcaatgtgcagtacaattatgaaccctGAAAATtagcagaatatgagcactttaagatgcAAGATGGTGGCGAACCCTGttcttgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgttggtgtgtgtgtgagtgttcgCCCTCACCTTTTCAGGAGTGTGAGAGAGGTCGTACAGTCTGTTGAGGCTCAGGATGTATCCGTCTGTCCGGTCCTGGTTGATCTGCTCCAGGGCCTCTTCTGCCACCCTCACCGCCTCAGGGCTACCGCAGCCTGGACGGTCCGGCCCGGCTCTTCCCTCCTGCTGCAGCAAAGCCAGACATAGAACCAGCAGGTTTTGGACAGACACATGTGAGGCCGATGCTGGACTTTCCCCTCTTGAGCAAACAGTTGCTATCTGCTGCTCCGTAGGCCAATGGCTGCCTCGGACTGTCTGGTCATAGTGCACTGGGGAAAGGGATCAATGAATTCAATCAAAGATAAGCTCATGGAATACAGTACATCtaattgcatttctttaatGAGATCAACTATCATGAACATTAACTAGCATCAACAAATTCCATTGTTCAAAGTACACTGTGAAACGTTTGCAGCTTGTTCCTCAGTATGTCAGTTACAAAATAATTATAAGTCATGGTGAAAAGAAGGATCAAAATTTAGAAATTTTGCAAGTGGCTACTGCAGCATAAACCAATTCTCCACTGCCCATTTGTATGTTAAACATCTTCCAAACTACCCTCTTCTTTCGGTGCTAGCGCAGGTAGCTGTTTACTTTTGTCAAACTTAACTGCTTACATTGAGTGCAAATGACAAATTCAAACAGCTAACCGCACTACCAACAAATGCAACCAGCGAATGTGCCAACAGCTGTGGAGCCATTTATAAGCGAGGCCAGGCTAAAACTTACATGAGGGTATTGTTCAGTGTTTTTCCCCATGTGATACATCATCATAGGCCAAATAATATTTTTGTGTCACCTaatctttcattcattcagacaACAGTGTCCGAGCATTAAgcttacaaataaaaacaaaattcttttcattttatacaaCCCTCAAAGTTTAGATAAGTGTCTTTTGACATGTTTTGGCTTTCTTTTTTAGTTGTTgcaaaatatagaatataaaagaGCATAGGGAAGAACAGCAGAGTAGTGAACTATGCTGCGGGGGTGGCTTAAGAATTTTCTTGGGACGTTTTGATACTTCTTTTAAGTCTCTTTTGGAGTATTTCttcaaaagacaaaataaaagcttttgtACAATTATTGTGATTGGccactgtattttatttatttaatgatgTTACTTGTAAGTAAACTTGAAAGCCTCATGTGATCTCATCTGAtcataaaaaaaagcatgtcCAATTATATTAGTACTCAAGTTCCATTCCTGTACATTATATTGGGATTACTTTTTCTTTggcctacagtatatacaacTTTCAATTACAAAATGTGTTGTGAGTTATGCGTGGGTTGTGGTTGGTTGTGTGTACAGTAAGAGCTACAGAACACAGATAAGAGCTGTTTGCTAAGTGTGCTACGAAATGTCCACAGAGATAATGTCTACAGAGTGGGTGAGTGTAGTTTTGACTGTTATGTTCTAGAGCTACTAGTGTTGTCTTTGCTTTGTGAAAGCTGCAGAAAGTTAACAATTATTTTTGCCTCTGAGATTATGTTTGTCAAAAGGAGCTCATAAATTACTTTGGGCACCCAATTGGCACCATATTTCAGTGACTCGTTCCTTTAATATTCC

Function

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126910 lncRNA upstream 15730 8159603 ~ 8160539 (+) True G94064
TU126907 lncRNA upstream 25399 8150462 ~ 8150870 (+) True G94062
TU126899 lncRNA upstream 72465 8103490 ~ 8103804 (+) True G94060
TU126898 lncRNA upstream 72906 8102993 ~ 8103363 (+) True G94059
TU126896 lncRNA upstream 184714 7991288 ~ 7991555 (+) True G94057
TU126921 lncRNA downstream 58887 8237370 ~ 8286436 (+) False G94073
TU126923 lncRNA downstream 100321 8278804 ~ 8279972 (+) True G94075
TU127007 lncRNA downstream 436428 8614911 ~ 8615634 (+) True G94151
TU127009 lncRNA downstream 474573 8653056 ~ 8653424 (+) True G94153
TU127024 lncRNA downstream 821680 9000163 ~ 9000460 (+) True G94167
XM_039811516.1 mRNA upstream 271123 7896145 ~ 7905146 (+) True LOC120565614
XM_039810957.1 mRNA upstream 286092 7880460 ~ 7890177 (+) True LOC120565294
XM_039810958.1 mRNA upstream 302283 7868591 ~ 7873986 (+) True LOC120565295
XM_039810959.1 mRNA upstream 302283 7868605 ~ 7873986 (+) False LOC120565295
XM_039811558.1 mRNA upstream 308541 7862214 ~ 7867728 (+) True LOC120565646
XM_039812447.1 mRNA downstream 29970 8208453 ~ 8214500 (+) True rgs4
XM_039810246.1 mRNA downstream 843034 9021517 ~ 9033680 (+) True LOC120564973
XM_039810130.1 mRNA downstream 878858 9057341 ~ 9062036 (+) True LOC120564878
XM_039812316.1 mRNA downstream 888695 9067178 ~ 9070676 (+) True LOC120566074
XM_039812315.1 mRNA downstream 888699 9067182 ~ 9070676 (+) False LOC120566074
TU126885 other upstream 271022 7898672 ~ 7905247 (+) False LOC120565614
TU126750 other upstream 825682 7349810 ~ 7350587 (+) True G93938
TU126420 other upstream 1807915 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 1962252 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 2136150 6035369 ~ 6040119 (+) False G93613
TU126919 other downstream 58887 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 58887 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 968679 9147162 ~ 9159695 (+) True G94199
TU127128 other downstream 1373813 9552296 ~ 9557568 (+) True G94239
unassigned_transcript_387 other downstream 1393815 9572298 ~ 9572369 (+) True trnah-gug_12

Expression Profile