RNA id: TU126920


Basic Information

Item Value
RNA id TU126920
length 3994
RNA type TUCP
GC content 0.38
exon number 6
gene id G94073
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 8237370 ~ 8286436 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cccactctataatttacaaagccctaacaattccagtaattcccccaagagcaagctttagcagtggctattgcgacagttgCGAGGAAAACTcgcttttaggaagaaacctcggcagacccagactcttggtaggcggtgtctgacggggccggttgggggttaacattttttcattattaaaataacaaatttggAGGACTTTTTGGCCTCCGCATCGGTATGTGTTCACTGAGTAGTCTGCGTGTTAGTTTTTCATCGCAGTCTTAAAGTCACAAGATGCTTCTAATGTACACACATAATGAATAGGTatcaaatgaagaaaaacaaagtgacaGTTGAAAGTCAGGAGTTTCCTCTTTTATAACAGTGAAACGATTCTGGGAAGAGTCCTTGCCATCTCCCTATTCAAAGAATCATGGAttccattgttgtttttaagAATAACTTAGACACAATTTGTTGTAAATAGTTgatatttacacacaaaaataaatacatcttcAGGAATTGTAtgcatatatatttttatgtggTCGACTCCAGAATGTACATGCAAGGCTACATCAAATAATGCATACTCAGCACTGTTAAAGCCCTTATTGAGTTTTCtttgagttttctttttctttctttgttgatTTGTATGACGCTTAAGGTTATGACACCAGACTGGCTAATCTGTGCCACAATAAACTCTTATTGATGctgtttaaaattaaaataaatctctcagattttttttttttttgatttcttGGTTGTTCCAATGAGTAATTGACATAATCAGTGAATACGTTTACAAGTTAGAATGTATGTCACTCCTGATCAATTTTGCTTTTAGTTTTTGATTAGTGCACAATACTTGCATTTTAGGGAACAATAAGGACTTGTAAAATGCTGAATATCTAGATAACAATATTCCTGTGTTGGTTAAGACATTATGCTTttgtttaatataaaaaagcatAAAAGACTAAATATTATCACACTTTATAACTGCTACATTCAACTAAATGTATACATTTAGGACACTTAAACATTGCACACCACCAAATCCACCATCACATCTGTCTATGTCTCAGCTTAGTGTAAGTTAGGTGAATACCAGTTTTACAGCATGTAGTAAATAATAACTTGTGGTTAATCTGGAAAATAAGAAAAGTGAAAAGTACACATAATGTCAGATTTATAAACTGACTATTTTGTATTTACTTGTCTGATTGCAATGCCACTATTTCCTTACATTTCCTTTATGACTTTATATTTTGATTTGTGCTACATGACTTGTAATTGAAAAACCACAATCAAATGATTATCAATAAACAGTACTGTCATTACTGTATATAGTGCTGCAAACCTGCAAGTTTTGTCTCCCATGTTTTTCACTGATGTAATAAAGACCAGGTCTGGACCTTTTTAGCGACTCGTCGTGCATAAACAGTACATACAACCTTGGTATTATTATCACATAGGAAAAAAAACCTTTCTCTGTTAAAACCACTGCTCTGTTCACTTCTTTTTTCAGATTCCCTCCGACTTGATTTTCCCATCCTAGCAACATGCAGTTTAGTGGTAGCCAAGGAGCTTCACCACTGTGCCAACTAGCCAGCACTGTTCTCAAGGATGGCTCTCACAGAATGTATCACAGCAAAAAGAGTTTGGTGAAAATCAAAAATTATACTGTCTGTGTGAGAGCGAGAACAAAAAGAGACGTATGTAATAATCATTACTCGTGCATTGATACTAGTTACAAGttcttttatttaaatgacaaaatactTGGTTGTTGCTGGGAATTTTTTTGTGAATCTGTCAACTGTGTAACTGTTCTATTCAGAGTTTCCCAATGGATTTCTTTCATAGACAGAAAATGTTATAGGTCATATTGTCCAGGCACTCAACAtggcatattattattattattaacaatttcTTGGGAAAACCACAAAGTAGGCTACTTAAAATTCACTCTGACGTCTAACTAAATAAGAGGTTTAGGTCTGTGGAAAAAGAAGGAGGGTCAAACTGGGttagatagatacagtagatagatactttattcatcccgagggaaattttagGGTTACCTATTGTGTTAAAGGGATTTACCATTTCTGTATATTTAAGGTAGCCTACTTCATTTTGGGGTCAAGCTATATTTTGGCAaaactgcaaaagaaaactttcATTTTAGTTACATTTGAATTTGGTTAATTCTGATTTAGTTCACAAAGTTACCCCTAGTAAAGTTTGCTTCAAAACAATCAACCATCTACATCTGTGTTACATTAAGGCATGGTTGATTTTTAGGCATAGGTTAGTGTCATGTAGATGATATGACCACAATTGAgtaaagttaaataaaatgaattattaATATAATTGTCAGTGGATTTTAGGCTTAGGATATCTAAATGACCACAAACAGCCCTGCATTAAGGCTCTGATAGAAAGTCATCCTTGGAGTATGCTACAGAATGCATGGCAGACAATGTGGTCAAACCTTAcacaaaactatatatatatatatgtctagaCAGGTCTGGCAAAGCTGCAACACCACCTTTACAATGTCAGACAATGTTTTCAAGGGATAATTTCATGAGTATACTTTTTAAGTAATTATATTAAAAGTTTAAGAACTAATTTAACTGAAAAGATTGAGTTATATGTTCTTCATAGGAACACATTGGTGTCTGTTTTGATGTGGACCCCATGTGTACATATccatattttttcatttgtgtGAGAACCAATTAGGTTTTTGAGGCCAATTTTTGACAAGTGAGGTCATTCTGGGGCCTGTTCAGGGAGACCCTCTCTTCTTTAAGAGGATAGGGAATACCTGTTGTCAATTGTAGGTCCTCACTTATATAGAAGTTcaagaacgtgtgtgtgtgtgtgttggttggaGAGGTATAGGGTGATTTCAAAAGGCAGTCTCACTTTAGTTACATTCAAATAAGGAAATATTATATCAtatcattttatattatatatttgtctAGTCTTTCATTTTTTGgatattttgtaaaaataagtCTTTGTTTCTCGAGCTGTCTGAGACAATGGTAGTTTATTAGAAATATTTAATTTCAAAAATGTATTCCGTATTATTTGTGTAATAagtgtttatcggtgttttaagccaaCAACGTCTCcttcaggcagcgctgcctggaaggcactaggagaaggcaatggttatggttatggttagggttaaaattagggttaggtgccttgaagtcaacggtcgcagtgctgcctggaaagagacgttgggggcttaaaacaccattgagcgtacTAACTGCTGTTTAAAACCTCCCCGACCCCAGCTCCTCAGACTGTGCACTGGCTTAGTTAACCAGGAGCTCCTGGTACTGCTCAGACCGAAGGAAACGACCGAAGGAGTCTTTCTCCATCAGGGCGAAGATCCTCTTCTGGGCCAGGTCAAAGGTTGTAGGGGAGAGATCAACCAGGTTCCTCAGGGTAACATCCTTGGTGAAGTGATCAATGTTCACCTCTCTGGGTCCCTCAGACTGGATGAAGTCTTCATAGATCTTCTTGGCCTTGGCGGCCATCTTAGCGGGGTTCTTGGTCTTCTTGAAGTCCTCGCAGGTCACCCAGAACTCAATGTTCTCATCACTGAACTCGGACTGCAGGAAGCTACGGAAAGCCGCCAGACCATAGCTGTTGTTCAGGACTCGGTCCAGACTCTCACGCCACTGAGCAGCCTCCTCCGGAGTAGGCTTCTGCTGCTTCTCCGGCTTCTTCTCAGTCTTCTCGGGATAGGGGATGATGAGATCAATGCCATTTTCCGGCTTCTGCAGTAAAACGCCCAATTTCGACTTGATCTCCTTCGCCCTTTCCCGGCAGGTTTGGGGTAAGGCAGCTAATCCTTTACACATTTTCCAATGGCTTCAGTTGCAGTATTCGAGAGTGAATTCAGTCTTCCTGTTAGCTCAATGTAAGTCTTAGAGTCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126914 lncRNA upstream 58887 8176269 ~ 8178483 (+) True G94068
TU126910 lncRNA upstream 76831 8159603 ~ 8160539 (+) True G94064
TU126907 lncRNA upstream 86500 8150462 ~ 8150870 (+) True G94062
TU126899 lncRNA upstream 133566 8103490 ~ 8103804 (+) True G94060
TU126898 lncRNA upstream 134007 8102993 ~ 8103363 (+) True G94059
TU126923 lncRNA downstream 24229 8278804 ~ 8279972 (+) True G94075
TU127007 lncRNA downstream 360336 8614911 ~ 8615634 (+) True G94151
TU127009 lncRNA downstream 398481 8653056 ~ 8653424 (+) True G94153
TU127024 lncRNA downstream 745588 9000163 ~ 9000460 (+) True G94167
TU127026 lncRNA downstream 746881 9001456 ~ 9001706 (+) True G94169
XM_039812447.1 mRNA upstream 22870 8208453 ~ 8214500 (+) True rgs4
XM_039811516.1 mRNA upstream 332224 7896145 ~ 7905146 (+) True LOC120565614
XM_039810957.1 mRNA upstream 347193 7880460 ~ 7890177 (+) True LOC120565294
XM_039810958.1 mRNA upstream 363384 7868591 ~ 7873986 (+) True LOC120565295
XM_039810246.1 mRNA downstream 766942 9021517 ~ 9033680 (+) True LOC120564973
XM_039810130.1 mRNA downstream 802766 9057341 ~ 9062036 (+) True LOC120564878
XM_039812316.1 mRNA downstream 812603 9067178 ~ 9070676 (+) True LOC120566074
XM_039812315.1 mRNA downstream 812607 9067182 ~ 9070676 (+) False LOC120566074
XM_039810147.1 mRNA downstream 826284 9080859 ~ 9083857 (+) True LOC120564889
TU126885 other upstream 332123 7898672 ~ 7905247 (+) False LOC120565614
TU126750 other upstream 886783 7349810 ~ 7350587 (+) True G93938
TU126420 other upstream 1869016 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 2023353 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 2197251 6035369 ~ 6040119 (+) False G93613
TU127064 other downstream 892587 9147162 ~ 9159695 (+) True G94199
TU127128 other downstream 1297721 9552296 ~ 9557568 (+) True G94239
unassigned_transcript_387 other downstream 1317723 9572298 ~ 9572369 (+) True trnah-gug_12
TU127191 other downstream 1563046 9817621 ~ 9879198 (+) True G94281
TU127195 other downstream 1590174 9844749 ~ 9845804 (+) False LOC120565620

Expression Profile