RNA id: TU127064


Basic Information

Item Value
RNA id TU127064
length 3216
RNA type TUCP
GC content 0.52
exon number 2
gene id G94199
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9147162 ~ 9168877 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATCGTTAATTAATTGAACATTTCCTCAAGTACAGAGTCATACTCAAtgtaaagctttaaaaaatacAATCTCAGTAATCTCTGACGTGACGTGAGTGCtttcatttagattttttaaaacaaaataaagtataTGACAGATAAACCATCTCGCCTTCTTTGAAGAATCTGTAACGTAAACATTGAGGAACAGGGCAGCATAACTGGTCAACGTCAAAGATACTTTCATTCATATTTAGGTAGTGTAACTTTCTACAAAATACATGTGCAATTCCCTTTGTCTGTAAACACAATTgtgtcttcctttttttttggattTGTAGAGTGCAACATACTGTACTCCCCTTTAGAGAAGAGCCTTCACATTAACTGTAGCATGAATTACCGTCACCACCTTTCTGTTGGCACCTGAATTATCATAAACACCACTCTTAAATGGCTGCAGCACTTTTTGTGCATGCTCCACATCACAGACAATCTTCCTTTTAGAAATAGCTCAACAGGTTTACAttacttaacattttttttttctcaaattaacaaaaatagTTCAGATCATCAACTGTACACAATACCAAAGACAATGTGCTTTTCCCCATATAGTGAATAGTGCTGAGTTCAAAATGCCCACTACTGGCTGAGTTACAGTGCGCCAATCTcgccatttttttctttttttttttaagtggttgGTAGTCACAGGATGGATCATGGAGGCCTCTCTCCATGAAACTTTCGGTGTCTGTACCTGCCGTTCTTTTCCTTGGCAATGTTGATACAGGCGTTGTGCTTGTTGCTCTCCAAGTGGCTCCAGTACTTGATGAGTTCATTGGGATAGAACTGATGGGACGTGATCAGGTGGCTGTACTTACAACTGGAGTACGACACCCGCCAATGGTTGAAGAGGAACTCGTTGGGAGGGGGCGCCGGGTCGATGCGCAGCTTTGCCAGGCAGATCCCCACGTAAACATCCTCCAGGTGCAGCCTGCGTATGCTGAGCGAGGCCTGGTAGATCAGCTCGGCCATGTCCCCTGAGAACACGTACCCCGTGCCTGAGCAGAATATCGGGTAGCGCTCGCTCGGGTACAGCTCCGGCGGCATGTACCACTTGCTGTCCTTGTTTCGGTTTGGTGCGTAGCCCCTCATCAGGTAGCCAGTGAAGTACCTCTGCTTGGGAGGCAGCCCGGGCTTCAACAGCTTTTGGATGAGATACTCGGTATTGACAAACATGTCGCTGTCCGTCTTCATCACGTAGGAGGCGTGCGGGCAGTAGGTGGCCACCCAGTTCATGCCCATCAGGGTTTTGATGGTCAGGTTGTAGTAAGTGTCCTGATAGTCCTGTTGGATGATGTCGTGGTGAACGCGGCTCTCTTCCTCTATGCTGCTCTGGAGGTAGGTGTCGGAGCTTTTTCCCGTGCCGAGCAGGAAAAGACGGACAAACCCCTGTCCGGACACCCTTATGCTCTCATTCCCCCATGTCTGGCGGATAGCGTTGCGGGCATCGGCCTGGGCGGGTTCTGCAGCGATAAGGAGGATGAGGAAGGGCGTGCGGTCCCTGCACTTGAAGGGCTCGTTCAGGATGTAGCGGTAGGGCTGGGCGCTGAGCCTCCCTCCAACACCCATCTCCTTGTGTAAACTGTTGTTAGCGCTCATGGAGTCCCCGAGCCCCATTACGCCCATCCtggctcctcctccccctcctgctgctgctgccgcctccCCCGTTGCCCCATCCGCCTGCTGAGAGCTGAGGTTGAGCGGAGGCTTCGGCGCTACGTACCCCGTCTCCCGCCACAGGCTCCTCAGGGAGCTGCTCTGGTTGGCTTCTCCCTTGGGGCTGCGGAAGCCCCTGGTGGCGTAGGCCAGCGGGTTTTCCCGGAGCCCACTGCGTCCCGGCAGCCAGTCCTGGTGGCTGAAAAATAAGAAGAGGGTGAAGAGCAGAGCCAGCGAGAGGAGGCCGGCCACATGGGTCCGGAAGAGCGAACGCTTGACCGTCCAGGTCATCTTGATGGGACAGCAGTGCCGCCGTCTCCACTGCATGGTGCAGATCGGGGTCGCgggaagctgctgctgctgctcgagAATGGGCGGCGGCGGTCACACACAGTCACCTCAAACATGTGTTTGCCAACAGTCAAGAGGGATATCTGAGCTGGCAGATGGGTTTGGAGTGAGCCTCCTGGTGGAGTCAGGGGAACGTTTCAGCCCCCCAGTGCAGCTTGCAGCAGGGTTAAAACAGCTCCTGATGGAGCTAGGAAGGCGGTGATTCTCTGGCCATGGAGGCTTCTCCCTGGCTCTTCTGTGGCACTGTAGACAAACCCAAGGTCATGCTCTATGTCTTGTCTCCTTCAGGATACGATAAGGGTCACCTCCTCTGTGTTTGCGCTCTCcaatctcctcctcctcatgctgctACGGCTGCTGACAGGGCTGCGGTCGGCTTACGGAGTGTGTGCACCCCGGTGCGTTTACCGGCCATCACCGCCTGTTTCTGATTGGAAACAACCTGCGCTTTAATGCCTCTCCTCTTCCAGCTCCCTCTCCTCTAATCACACTGATCAACACCTTGGCTGTGTTAGGCTGCGTCCCTCCTCGTCCTCATCCCCGCAGGCTCAGCAAACCTGCAGGTTTTTGGTTCTCCTCCTGCTGCGAATcctcttctcctttctctcctgcTCCTTGTGTCCGTTATACACCACAGCCTCCCTCTACCTCACTACTTAATAAATAATGTTGGTTCCCCTCGCTGTTTCACGGTTGTTTCCTGATCTTATCCTAGTTTATCTCCTTCCCAGGAGATGTTATTTTATGTTAaacatgtaaaagaaaacagcacAGCATCCACACACGTTTATCCGGAGCCCGAACGGCTCTAAAAAGGAGGGGAGAGCAGCGGCGGCAGAGCAGCCGGAGTGAGACTGGTCCTTCACGATGCTCGGCAGGCTGATAAACACTATCAGCGCAGTGAAAGCGATAGagaaaaacaatgaataaaaaaatatcctCTCCCACCTCTTAGTCCAATCACTGCCAAAATGTTGCCCGAGTAGCCTactgaatgaaaaacaaaaacaactagtCGTCTACTTTCTCCTCCCCGCTTGTTAGCTAGTTTTTCTTCTGTCGTTATCTTTCCTCCGCTCCGTCTTTGACCGATCCCTGTCGGATTTCCCAGCCGGGCAAGAAAGCTGCTGGCCCGGGCATCCAGGCTGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127056 lncRNA upstream 50870 9089828 ~ 9096292 (+) True G94192
TU127026 lncRNA upstream 145456 9001456 ~ 9001706 (+) True G94169
TU127024 lncRNA upstream 146702 9000163 ~ 9000460 (+) True G94167
TU127009 lncRNA upstream 493738 8653056 ~ 8653424 (+) True G94153
TU127007 lncRNA upstream 531528 8614911 ~ 8615634 (+) True G94151
TU127068 lncRNA downstream 9624 9169319 ~ 9169757 (+) True G94201
XR_005640321.1 lncRNA downstream 275026 9434721 ~ 9437621 (+) True LOC120566015
TU127117 lncRNA downstream 324308 9484003 ~ 9485965 (+) True G94232
TU127112 lncRNA downstream 334286 9493981 ~ 9495328 (+) True LOC120566016
XR_005640322.1 lncRNA downstream 334458 9494153 ~ 9495357 (+) False LOC120566016
XM_039810147.1 mRNA upstream 63305 9080859 ~ 9083857 (+) True LOC120564889
XM_039812316.1 mRNA upstream 76486 9067178 ~ 9070676 (+) True LOC120566074
XM_039812315.1 mRNA upstream 76486 9067182 ~ 9070676 (+) False LOC120566074
XM_039810130.1 mRNA upstream 85126 9057341 ~ 9062036 (+) True LOC120564878
XM_039810246.1 mRNA upstream 113482 9021517 ~ 9033680 (+) True LOC120564973
XM_039812203.1 mRNA downstream 224810 9384505 ~ 9543535 (+) False LOC120566011
XM_039812202.1 mRNA downstream 224811 9384506 ~ 9543535 (+) False LOC120566011
XM_039812205.1 mRNA downstream 224811 9384506 ~ 9543535 (+) False LOC120566011
XM_039812197.1 mRNA downstream 224813 9384508 ~ 9543535 (+) True LOC120566011
XM_039812201.1 mRNA downstream 224814 9384509 ~ 9543535 (+) False LOC120566011
TU126920 other upstream 892587 8237370 ~ 8254575 (+) True G94073
TU126919 other upstream 901341 8237370 ~ 8245821 (+) False G94073
TU126885 other upstream 1241915 7898672 ~ 7905247 (+) False LOC120565614
TU126750 other upstream 1796575 7349810 ~ 7350587 (+) True G93938
TU126420 other upstream 2778808 6354897 ~ 6368354 (+) False rhpn1
TU127128 other downstream 392601 9552296 ~ 9557568 (+) True G94239
unassigned_transcript_387 other downstream 412603 9572298 ~ 9572369 (+) True trnah-gug_12
TU127191 other downstream 657926 9817621 ~ 9879198 (+) True G94281
TU127195 other downstream 685054 9844749 ~ 9845804 (+) False LOC120565620
TU127196 other downstream 685054 9844749 ~ 9845981 (+) False LOC120565620

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040531 True 2909 mRNA 0.48 2 NC_007133.7 24157807 ~ 24169089 (+)