RNA id: TU127124


Basic Information

Item Value
RNA id TU127124
length 3269
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G94238
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9547714 ~ 9551691 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccGAATCggatcgggacaaaagcatatcatcCCAGCCCTAGAACTGAGAGCTCAGGGCTGTTGAGAAAATGCTGTGGCCTTCTCCATCCATCCTCAGCTGAACTTTACTTTCATGTCAGACAAGTTGCTTGGTAGTAACTCCTTATTCAGCACCGTGTGCAACTTAAACTATTCTTTTAACTCGATATTCATCCcatcagtttgacattttgggaatacAGAGATCGATACCACTCGCAACTCGGTATGCTTAACATGAAGCTAGAGCCAGGAGGCAATTAGCTTAGCGGGAAGCAGCTAGCCTGGGTGTCCAAAAACAATCCATCTACCATCCCCTCTAAAGATCACTATGCAACGGGTTTTATCTCTTTTGTTCAATCCGTACAGAAACTCCCCAGTAAATACAACAAGCTGACAAGAAGTCACTGCGCCTTGCaatataaattaaaacaaattagcCCTGCACAAAATACTCCGTAAAACCTTAAGGTGTTTAATGTTAGAGATACACAGCCACGTAGATTATTTTTGGACTATTAGGTTATATAGGTTATATTATGCATATATTGTGAGTAAAAACGCTTGCGTCTGCTTGGTTTAGAAAGTTCAGCTAGGCAGAATTCTTTGGCCTCTCCCTAACCGTGACGTAAGGGATCCAGTTATTAACCCGAGCCCTGACGAATACCTTTTTCTTCAGGCGAGAGGTGTAGCTTATTTGTCAAAGGACCCTTTTAGCAAGTCAAAATATCACTTTAACATCATCTTCATGTTTCACACCCTGATCACGACAGCCTGATTACTTTTCATGGCTACATAAAGAGAGCAGGTCTTAGGTTTGTACCTTGGAGAGGTTTAGGAGGATCTGGATGGAGTAGGTGATGACGTCCATGCAGGGGACACTCCTGTTGCAGGAGCGGATGAGCGTGAAGATGACGTTGGTGGCTCCGCTCTCTACCAGCCGCTCACAGCACTCTGGGGACAGTCTGGTGGTggtctctgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactaacgttAGCACTCAGAACAAACTGCACTACCGAAAAGATTGACACCTGAGATAGTCTTCACAAATGCTAGAGCTACAAAAATTATTTGATTCATCAATCAGTTGTCAACTAGTAAATGAATCGCCAAATTTAAGATCgtcgattaatcagtttgagtaaaATGGTTTGCGTttctaagtaaataggtttTGATTCCAgattctcaaatgtgaatattttctagtttcttcactcctatATGaccgtaaactgaatatctttgcgCTGGGGACTCaatgagacatttgaggacgtcatcttgggctttggaaaacaatgATCGACATTCATATTCATTGATAATGATAATTATTAGTTATAGCCCTAATACCTACTGTTCAAACGTTTggactatatatatttttgaatggTCTTTCATGCTTCAAGGTTGTAAAAGTTTTGTATATTGAGAGAAAAGGTTGTACAATGGTTTAACCAGACTGACAATTCAAATTAAGGACAAAAAGAAAGATCAGAAGAAGAATTCCCAGTAATTGGTTAAAAAACAGATTTGTGTGCAGATTTAAATAGAAAGGAACAGTGTCCTGTTTCACAGTTGTCAAGTACACAACAATGCAGCCTAACAAGCTGGAATTAACAAGCAGGTTGTTTTAGCGAAGCTCTTCTTCAAAACTTCACAATACAAACTGGTGGTTAGTCTAGGGTAAGCACTATTGGAATATCAACTGAACATACTATGGACCGACAAATCAGTTTAAACTTCTTCAATCTAACCACTGAGTAGACTGCAGACagcccaaacaaaaaaaaaaaacggggtcCCAGAATATTTAGAGCCCAATTGCACCGTTGTGGTTCGATAACGATCGAGGGTCACTTGCACTTTTCTGGACTGAAATTCTAAATCCAATTCAAACTGTATTGTCCCTTGTTATGCAACACTGCGGGGACATCGACTAAATGGAAGTTTGAAtcatttcattcttttttttggagCCACATCTATTGTAAAGTACATATTTGGTGTCTGAATATGCGGTTTTTATCTGTTTAAATAACAATTGTTGttcggggcgacctctagctcggCCAATTAGAGCCCCAGCACCCCCAACATGTGGCCCTTTGCTCAGTGTCATCCCCCatatctctctcccacctttcctgtctatccactgtcactctgaatTAAGAGAAAAAGCCCACGAAAATTCTTTAAATAACCATTGTTGAAGCAAAGAAAAAAGGGGTCAATATAAAAGCTGATTATAGACCTTTGAACAGCGAAGTCAATCAGATTCAAGTATTAGCCAAGGAAactcaaaaactttttttttgtctatgaGGCACTTACACTTTGGATGTTTAAATTGCAAAAGTCAAACACCTTCTTATGTAATGAACTTATTCTTATCTTGACAAACCAAGCACTTTTGATACGACAACACACAACCAAAATACATCAGAAGAGGAACTGATTCTCCCGCACTTCCTACAAAGACTTCCCGTTTCTCAGTCCAAACGGTTGCTAAATTACAGCGGGTTTTGACATGACTTGTCTAGACTGGAATCATCGTTTAACCCTTCCTCTGGTTGTGAGCAGTTTCATGCAAGAATCTTTTTTTCTACAGAACTACACCTGTGAACACCGGTGAACGGTCGCTTTACTAGTCTTATAACAACACTAACTTTGCGAAGTGTTCTCTTCCCTCGCCCAGATTGTTGCTCTGCTGGCCTTTATCAACTACAATAAAGGTTGCTTTTCCAGTAAAGCTACATAGTGGCATATGGCTGAATTGCCAGAAGAAGCAAACCTTACCCAGGTTTCTCAGGGCCTCTAGGATGTAGGAGAAGTGTTTGAATCGAAGGAGGTATTCCAGGGCAGACGAGGTCTTGTTGCACAGTTTGTCCTCCTCTTTGGCGCCGGCAGAGACTTTGCGTAGACGGTGTCTCAACTTCACCACCTTGATATTGTCATTCAGTCTACGGGAGCGGTGTCCTCTCCACAGAGCCTTAAGGGAGCTGTGCTTTTACAATGCCCTGTTGAACCCTCTTCTGGCGCCTGAGAAGGAGGAATTTGCGGACGGCTTGCTGGATGACGGACGCCACCTTGTGGCGACGAGCTAACCAGCGCTTGACCGCTCTCTGGGCTATGACCACCTTCCTCCTGTCTTCCAGATACCGTCTCCTCTGCTGCCTCGCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127114 lncRNA upstream 4220 9541467 ~ 9543494 (+) False LOC120566011
TU127116 lncRNA upstream 6655 9540537 ~ 9541059 (+) True G94231
XR_005640322.1 lncRNA upstream 52357 9494153 ~ 9495357 (+) False LOC120566016
TU127112 lncRNA upstream 52386 9493981 ~ 9495328 (+) True LOC120566016
TU127117 lncRNA upstream 61749 9484003 ~ 9485965 (+) True G94232
TU127153 lncRNA downstream 110441 9662132 ~ 9672803 (+) False G94259
TU127155 lncRNA downstream 121740 9673431 ~ 9679737 (+) True G94259
TU127173 lncRNA downstream 140238 9691929 ~ 9693033 (+) True G94266
TU127336 lncRNA downstream 349504 9901195 ~ 9902122 (+) True G94373
XR_005640304.1 lncRNA downstream 357216 9908907 ~ 9912100 (+) True LOC120565916
XM_039812203.1 mRNA upstream 4179 9384505 ~ 9543535 (+) False LOC120566011
XM_039812202.1 mRNA upstream 4179 9384506 ~ 9543535 (+) False LOC120566011
XM_039812205.1 mRNA upstream 4179 9384506 ~ 9543535 (+) False LOC120566011
XM_039812197.1 mRNA upstream 4179 9384508 ~ 9543535 (+) True LOC120566011
XM_039812201.1 mRNA upstream 4179 9384509 ~ 9543535 (+) False LOC120566011
XM_039812218.1 mRNA downstream 23567 9575258 ~ 9587669 (+) False depdc1a
XM_039812217.1 mRNA downstream 23745 9575436 ~ 9587669 (+) True depdc1a
XM_039812221.1 mRNA downstream 37465 9589156 ~ 9603575 (+) True LOC120566020
XM_039812222.1 mRNA downstream 63104 9614795 ~ 9671788 (+) True fnbp1l
XM_039811520.1 mRNA downstream 214385 9766076 ~ 9785140 (+) True hps3
TU127064 other upstream 388019 9147162 ~ 9159695 (+) True G94199
TU126920 other upstream 1293139 8237370 ~ 8254575 (+) True G94073
TU126919 other upstream 1301893 8237370 ~ 8245821 (+) False G94073
TU126885 other upstream 1642467 7898672 ~ 7905247 (+) False LOC120565614
TU126750 other upstream 2197127 7349810 ~ 7350587 (+) True G93938
TU127128 other downstream 605 9552296 ~ 9557568 (+) True G94239
unassigned_transcript_387 other downstream 20607 9572298 ~ 9572369 (+) True trnah-gug_12
TU127191 other downstream 265930 9817621 ~ 9879198 (+) True G94281
TU127195 other downstream 293058 9844749 ~ 9845804 (+) False LOC120565620
TU127196 other downstream 293058 9844749 ~ 9845981 (+) False LOC120565620

Expression Profile