RNA id: TU127173


Basic Information

Item Value
RNA id TU127173
length 282
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G94266
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9691929 ~ 9693033 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGTTGGCTGCCACAGCGATCCTTTGACCTGAGCTGGCTGCCTCGGCTCACGCCGTCGTCCCGGCCGTGTGTGCTGTCGTGcacggtgtgtgtgttgtcgtgtgtgtgtccgttGGTAATGTTGAGGCTGCGGCGCTTCTGATTCCGCCTCTCCTGCGCCATGAGCGCCTCTCGATGATGGCTGGACAACCCGTACTTTTCCTCCAGACAGCGCAGCGGCAGCCCCCTGTTAATTGGCTGGAAGATAATGGCTCCTACCACCTTAAATGCACAGATAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127155 lncRNA upstream 12192 9673431 ~ 9679737 (+) True G94259
TU127153 lncRNA upstream 19126 9662132 ~ 9672803 (+) False G94259
TU127124 lncRNA upstream 140238 9547714 ~ 9551691 (+) True G94238
TU127114 lncRNA upstream 148435 9541467 ~ 9543494 (+) False LOC120566011
TU127116 lncRNA upstream 150870 9540537 ~ 9541059 (+) True G94231
TU127336 lncRNA downstream 208162 9901195 ~ 9902122 (+) True G94373
XR_005640304.1 lncRNA downstream 215874 9908907 ~ 9912100 (+) True LOC120565916
TU127377 lncRNA downstream 288389 9981422 ~ 9983844 (+) True G94400
XR_005640261.1 lncRNA downstream 292686 9985719 ~ 10159881 (+) False LOC120565490
XR_005640260.1 lncRNA downstream 292820 9985853 ~ 10159881 (+) False LOC120565490
XM_039812222.1 mRNA upstream 20141 9614795 ~ 9671788 (+) True fnbp1l
XM_039812221.1 mRNA upstream 88354 9589156 ~ 9603575 (+) True LOC120566020
XM_039812218.1 mRNA upstream 104260 9575258 ~ 9587669 (+) False depdc1a
XM_039812217.1 mRNA upstream 104260 9575436 ~ 9587669 (+) True depdc1a
XM_039812213.1 mRNA upstream 218555 9462445 ~ 9473374 (+) True LOC120566014
XM_039811520.1 mRNA downstream 73043 9766076 ~ 9785140 (+) True hps3
XM_039811353.1 mRNA downstream 92759 9785792 ~ 9796989 (+) True LOC120565507
XM_039811523.1 mRNA downstream 151238 9844271 ~ 9846275 (+) True LOC120565620
XM_039811524.1 mRNA downstream 158092 9851125 ~ 9865455 (+) True LOC120565621
XM_039811407.1 mRNA downstream 240580 9933613 ~ 9948237 (+) True ttc14
unassigned_transcript_387 other upstream 119560 9572298 ~ 9572369 (+) True trnah-gug_12
TU127128 other upstream 134361 9552296 ~ 9557568 (+) True G94239
TU127064 other upstream 532234 9147162 ~ 9159695 (+) True G94199
TU126920 other upstream 1437354 8237370 ~ 8254575 (+) True G94073
TU126919 other upstream 1446108 8237370 ~ 8245821 (+) False G94073
TU127191 other downstream 124588 9817621 ~ 9879198 (+) True G94281
TU127195 other downstream 151716 9844749 ~ 9845804 (+) False LOC120565620
TU127196 other downstream 151716 9844749 ~ 9845981 (+) False LOC120565620
TU127346 other downstream 209252 9902285 ~ 9903189 (+) True G94376
TU127361 other downstream 254073 9947106 ~ 9948230 (+) False ttc14

Expression Profile