RNA id: TU127191


Basic Information

Item Value
RNA id TU127191
length 1025
RNA type TUCP
GC content 0.44
exon number 2
gene id G94281
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9817621 ~ 9879198 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gccttgTATAAAATTAGCCCGATGATTGGTGCTTCTTCAGCACTATAGGACCCATTGCCCATACATGGATGTAGAATAAAACCTGCCaatgtacaaaagtgaagccaacaTATCCTGGATAGGGAAAGCAGGTACGCAGGACCTGTGGACATGGTTCTTTGTTTCAGAAGTTATTACTAAAAGTAAATTCCTAACATTTGGTGTGACtgtaaaaaagggggggggggcacgtGTGAGCGTAAAATATAAAATTGTGTACAGGGGCCGACAGTGCCACCTAGGTTTTTAGTGAGGCCTAGGACCTCTTAGAATTAGATTCCAATTCAAGAAGAAAGATTAAAACAGGTCCTTTGTACCGGGGGAGAGCGGTTAAAACAAGTGTATTTAAAACTATGAATAAAAACCAGATGAGGAttaacaaaatttaaaaagaataaaataaaccaATTAAAACTCCTCAAAAGAATTTAAAActaaaacacaaactaaaaagTCAAGCAAAAAAATAGTCAACAGAACAGGGGTGAGGGATTAAAATGTCCACAGGTCTCCGCTGGCAACCAGCTTCTTTATCGTTTGGCTCCTCTCCTGGGGCATAGTCTGTAAAAGAGAACTCTATGCCAGTCAAACATCCTTTAAAAGTGCCACCGCTTCATACaattcacacaacaaacaccGGTCTTAGAAAGAGACTTACGCGCAAGGGAGAAGTTTTACCTTCTCCCACTGTTGCCGCTAGCAAACGGTGTTTGAGTTTCTCTGTGTTGCTCTGTCTGCTCCTCTGTCTGTTCCATTCCATCTGTGGTGCTCTCATTCTGTCCATGTCCTCCTCCATGTTCTCCTGTTGGTCTCTTGTACGTCTTCGCTCTCGGTGTCCTCCATCATGTGCTTCTTCGCTCTCAGTGGCCTCCATCTTTTGCTTCTTCGCTCTCAGTGTCCTCCATCATGTGCTTCTTCGCTCTCAGTGGCCTCCATCTTTTGCTTCTTCGCTCTCAGTGTCCTCCATCTTCCCCTCACTGTTGCTG

Function

GO: NA

KEGG:

id description
ko04115 p53 signaling pathway
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127173 lncRNA upstream 124588 9691929 ~ 9693033 (+) True G94266
TU127155 lncRNA upstream 137884 9673431 ~ 9679737 (+) True G94259
TU127153 lncRNA upstream 144818 9662132 ~ 9672803 (+) False G94259
TU127124 lncRNA upstream 265930 9547714 ~ 9551691 (+) True G94238
TU127114 lncRNA upstream 274127 9541467 ~ 9543494 (+) False LOC120566011
TU127336 lncRNA downstream 21997 9901195 ~ 9902122 (+) True G94373
XR_005640304.1 lncRNA downstream 29709 9908907 ~ 9912100 (+) True LOC120565916
TU127377 lncRNA downstream 102224 9981422 ~ 9983844 (+) True G94400
XR_005640261.1 lncRNA downstream 106521 9985719 ~ 10159881 (+) False LOC120565490
XR_005640260.1 lncRNA downstream 106655 9985853 ~ 10159881 (+) False LOC120565490
XM_039811353.1 mRNA upstream 20632 9785792 ~ 9796989 (+) True LOC120565507
XM_039811520.1 mRNA upstream 32481 9766076 ~ 9785140 (+) True hps3
XM_039812222.1 mRNA upstream 145833 9614795 ~ 9671788 (+) True fnbp1l
XM_039812221.1 mRNA upstream 214046 9589156 ~ 9603575 (+) True LOC120566020
XM_039812218.1 mRNA upstream 229952 9575258 ~ 9587669 (+) False depdc1a
XM_039811407.1 mRNA downstream 54415 9933613 ~ 9948237 (+) True ttc14
XM_039811649.1 mRNA downstream 88156 9967354 ~ 9979742 (+) True fxr1
XM_039811652.1 mRNA downstream 88156 9967354 ~ 9979742 (+) False fxr1
XM_039811653.1 mRNA downstream 88156 9967354 ~ 9979742 (+) False fxr1
XM_039811650.1 mRNA downstream 88156 9967354 ~ 9979742 (+) False fxr1
unassigned_transcript_387 other upstream 245252 9572298 ~ 9572369 (+) True trnah-gug_12
TU127128 other upstream 260053 9552296 ~ 9557568 (+) True G94239
TU127064 other upstream 657926 9147162 ~ 9159695 (+) True G94199
TU126920 other upstream 1563046 8237370 ~ 8254575 (+) True G94073
TU126919 other upstream 1571800 8237370 ~ 8245821 (+) False G94073
TU127346 other downstream 23087 9902285 ~ 9903189 (+) True G94376
TU127361 other downstream 67908 9947106 ~ 9948230 (+) False ttc14
TU127375 other downstream 195008 10074206 ~ 10159807 (+) False LOC120565490
TU127611 other downstream 1037727 10916925 ~ 10941244 (+) True G94598
TU127615 other downstream 1067778 10946976 ~ 10948246 (+) False si:ch211-162e15.3

Expression Profile