RNA id: TU127346


Basic Information

Item Value
RNA id TU127346
length 905
RNA type TUCP
GC content 0.39
exon number 1
gene id G94376
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9902285 ~ 9903189 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagtggcgttccaccaaggtggaagaatctcgtttggattggcaagaaagtctcaaaacctataggaaggccctaagaaaggccagatcagactattactcatcactaatagaagaaaacaagaacaacccaaggtttcttttcagcactgtcgccaggctgacagatagccacagctctactgagccatctattcctctagctctgagtagtgatgacttcatgagcttcttcaatgataaaattacaacaattagagataaaattcatcaccttttacactcaacttctaacggttcacctttaaacgcagagtcgttagaaataaagactagtctcgacatatacttagactgcttttatcctatagatcttcaacaattattgttaaagatatcctcagctaagccatctacctgtctcttggaccccatcccaacgagactactcaaagaagcattacctgtggttaacacctcattactagatatgatcaatatgtctctattaacaggttatgtaccacagtcatttaaagtagctgtgataaaacctcttctgaaaaaacccaccctggatcctgaggtcttagcaaactatagacctatatctaaccttccttttctatccaagatccttgagaaggtggttgctaatcagttatgtgattttctacatagcaacagtttatttgatgactttcaatcaggatttagaaagaatcatagcacagagacggcactggtgaaaattactaacgaccttttaactgctgcagacaaaggtcttgtctccattcttgttttactagatcttagtgctgcatttgacacaattgaccattcaatcctgttacagagattggaacacttggttggcattaaaggaattgctctgagttggtt

Function

GO:      GO:0017137

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127336 lncRNA upstream 163 9901195 ~ 9902122 (+) True G94373
TU127173 lncRNA upstream 209252 9691929 ~ 9693033 (+) True G94266
TU127155 lncRNA upstream 222548 9673431 ~ 9679737 (+) True G94259
TU127153 lncRNA upstream 229482 9662132 ~ 9672803 (+) False G94259
TU127124 lncRNA upstream 350594 9547714 ~ 9551691 (+) True G94238
XR_005640304.1 lncRNA downstream 5718 9908907 ~ 9912100 (+) True LOC120565916
TU127377 lncRNA downstream 78233 9981422 ~ 9983844 (+) True G94400
XR_005640261.1 lncRNA downstream 82530 9985719 ~ 10159881 (+) False LOC120565490
XR_005640260.1 lncRNA downstream 82664 9985853 ~ 10159881 (+) False LOC120565490
XR_005640262.1 lncRNA downstream 85678 9988867 ~ 10159881 (+) False LOC120565490
XM_039811524.1 mRNA upstream 36830 9851125 ~ 9865455 (+) True LOC120565621
XM_039811523.1 mRNA upstream 56010 9844271 ~ 9846275 (+) True LOC120565620
XM_039811353.1 mRNA upstream 105296 9785792 ~ 9796989 (+) True LOC120565507
XM_039811520.1 mRNA upstream 117145 9766076 ~ 9785140 (+) True hps3
XM_039812222.1 mRNA upstream 230497 9614795 ~ 9671788 (+) True fnbp1l
XM_039811407.1 mRNA downstream 30424 9933613 ~ 9948237 (+) True ttc14
XM_039811649.1 mRNA downstream 64165 9967354 ~ 9979742 (+) True fxr1
XM_039811652.1 mRNA downstream 64165 9967354 ~ 9979742 (+) False fxr1
XM_039811653.1 mRNA downstream 64165 9967354 ~ 9979742 (+) False fxr1
XM_039811650.1 mRNA downstream 64165 9967354 ~ 9979742 (+) False fxr1
TU127191 other upstream 23087 9817621 ~ 9879198 (+) True G94281
TU127196 other upstream 56304 9844749 ~ 9845981 (+) False LOC120565620
TU127195 other upstream 56481 9844749 ~ 9845804 (+) False LOC120565620
unassigned_transcript_387 other upstream 329916 9572298 ~ 9572369 (+) True trnah-gug_12
TU127128 other upstream 344717 9552296 ~ 9557568 (+) True G94239
TU127361 other downstream 43917 9947106 ~ 9948230 (+) False ttc14
TU127375 other downstream 171017 10074206 ~ 10159807 (+) False LOC120565490
TU127611 other downstream 1013736 10916925 ~ 10941244 (+) True G94598
TU127615 other downstream 1043787 10946976 ~ 10948246 (+) False si:ch211-162e15.3
unassigned_transcript_388 other downstream 1345386 11248575 ~ 11248647 (+) True trnam-cau_8

Expression Profile