RNA id: XR_005640259.1


Basic Information

Item Value
RNA id XR_005640259.1
length 3044
lncRNA type sense_over
GC content 0.45
exon number 5
gene id LOC120565490
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9985719 ~ 10159881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGCCACAGCATTCCTAGCTGGCTCTCCCCTTGAACACTGAGCAGAAGGCTGGGGCTGAGGGAGGCAGAGTAGAGGGGAAGGCAGCCTGGAGGAGAGGCAGGGACAGGGAGAGCTGAGGCCGGGTTAGGAGCTCCGAGGCTGGGGGTTAGGAGGATGGCGGGCCAGGGTAAAAGTGTGGAGGTGGGAGTGCGACGTGGGCACAGGAATGCGGTTAAGGTGGGAGAAAGGTGAAATACAAGGAGGCCGCGATTAAAGTGCCATAGCTGGGAGAGGAACGAGAGCTAGAGACGAGGGACAAGGTGAGGAGAAAGTGTCacactgaggaggaggagaaggccaGGTAGGGAAGATTAAGTGATGGTGGAAAAGAACTGGGAGTCAACTGAGACTAGGTTGGCTAGGGGTTGAAATATAAATGCATATAAATTATGTACGAGTGAGGAAGCCTGAAGATGTCTAAAGCCAGTTAAGGTATGAGTGCTAGACTATTTTGGAGGTGAGACAGGTAGCAAGGCAACAAGAGACCAACACATGGGCAGAAAAGGAGACAGGAATTTAGTATTCCAGCTTTAGGAGTGGGGAGTCTTTTTTGCTTTTCCTGCCATGGATGTAGTGCTGGTTTGGACAGCGGCTGGCGTCCAATCAGACAACAGGACTGTAGGCCTTGTCATAACGACAACCATGACATCACTGCAAGGGCTAGCGGAAAGAAGACAGCGGAGCTCCAGACAGACAGCGGGGCTTCACGGGGCTGCACGCCGGACAAAGCGAGCCGGCTGCCGGATAGAAACCGCGCGGACTACCGGGGATGGGGGAAACACGCTGAGGGTGCCGGTTGGACGTTTCTCGGCCGGCTTTGGGAGCTCTGTCCCGGACAAGTTGAGGCTTCCTCGGGGAAGCGAGATGAAGATATGGAGGAGGTTGAGCGATATGGCATCTTGTTTAATTTCTGCCAATCAAGACGAAAGGAAGACGACTCCCAAACTGGCATGACGTAACGGGAGAGTGAAGACACGATCAAGGGACCAGAAAATGCATAAACCGGATGGAAAATGGGAACTGAGTAGCAGCGGCTGCTGTAATCTCCGCTGTTCAATTAGCAGCGCTGACCGGGACGCCACCTACACTTCATTAACAGGGAGGGGAAGGTGAAACATCAAGCCAGTAGGAGTACATGAGATGGGGAGTAAATGAGAGCTTGCTGTCAGTAGTGTGAGCCATTTCCAGGTGAAGCAAACTGAATTAAACTGAACTGATCTGAACTGGAATGACCtgaaaactgaactgaactgaaacgAAAGCTTCCTCTGGACAGGACACACGGCTCTCTGAGCTTTCGGAAAAAGAATGTTCATGCAGAGGAAATCCTTGAAATAATACAGACGAAAGCCTGCTGTCATGCATGTTGTGTTGTCTCCTGTTAATTCACATTTACATTATGTTGTATGACATCAATTTGACTTAATTTAATTATGAATTTCAGCTTTCTCTTGTGTGCACATGGTCcgttttatcttatttttttaatttatcatAAACACAAGGCAACTTTTACGTCACTGTCTATtaagtttatttcttttttttttgtgtaactACGTATGTTCATGTATCTATATGAGGGATAATCATGGATTAGTCTTACAGTAATACAGATGCTATAATTGATATTTTAacaatgtgaaaacaatgtTACAATGTGAACGGAGTCTCTTGTTGTGACGAAGCTTCAGAGAAATGTCTCCTGAATCTTCATCACCTCTCAGCTTTATGCTGCATTCACATGGATCCAGGCAGACGGACACCTTTTGGACGACAAGACGAAACACGCATGGCGATACGTTGCTATGGTGATGTATTGTTCACAAAGAATGggataaaatatataaaaatgattTTGTCTATTTAGAAATGCATGTGGTTTCTTGTAACATCAACGGTACAATTAAAGTTCTAATCAGATCAGTGTTACTACAGTGTCTACTAGCTCAGCGTTGTCCAGATAGTGGTTTCTCCTCGTGTGAGGGAGCTACGCAACATCGGgttcttaaaggtccagtgtgtaacgtgtttagttgttcattatcaaaatctgtgttgcccgttcacacacttgtcctttttcatgactatttaccaccgccatcaattccaagtattcctattggctgccatttgcattcacatgaactggggtagacgctccatattcatgcgctatcttgaaatacattagccggtaagggacaaaCAGGACGTACTGCTCCGcttttcgcgttttcgctgtcatataataaactcccaggtgctgctaatgctgctaatgggtatcgtagcttcccggccccggcaaacatggaggaccacacgtattctaAATTCTttttcgcccagaaaaagaaaaaggatattgaaaagagcaagagaccggcgtcatcagaaaaaagcgtgaaggctaccgtagctgtaatatgtACTTTGAACTGTGTGGCGTGAGAGAGTTGATtacgatatatgatctcaacgccaGATGGGTGAAATtgccacacattggacctttaattcCATCACGGAGGATGGCAAACAGTTAAATATTTTAACTTTGGACAGCAATGCCATCGACTGTTACCAGTATTCTCTGCCGGCCTCAATTACTTTTACCGCCCTACTCTCGTTCACAAGCAATTGTTTGCTAACATAACTTAAAAGTTGATAATATCAATGTTGTGTTTCCGCTGcctccaagtggccaaaaaaaaccATTTATTGCAGGTTTTAATAAATACAGTTAAagttaagtaaataaataaagttaaagtAGTCTAACACAGTGGGTTTTCTCACACAGGGTTTCCcacgagtctttctaaaaagctgaaacatgtttctgaggcTTAGAAATATAGCCCCTTGACATTTTATACACATGTAATAAAGATTAGATGCCTGCAGTTAAAGCCTTAATGGGAGTTCTGGCAGCATGTTTCTTTTATTACTATCTGgaatgtgaaaaatgtgaatAAACGTTTCGGTTTGGGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127377 lncRNA upstream 90341 9981422 ~ 9983844 (+) True G94400
XR_005640304.1 lncRNA upstream 162085 9908907 ~ 9912100 (+) True LOC120565916
TU127336 lncRNA upstream 172063 9901195 ~ 9902122 (+) True G94373
TU127173 lncRNA upstream 381152 9691929 ~ 9693033 (+) True G94266
TU127155 lncRNA upstream 394448 9673431 ~ 9679737 (+) True G94259
TU127383 lncRNA downstream 23313 10183194 ~ 10183408 (+) True G94405
XR_005640263.1 lncRNA downstream 44259 10204140 ~ 10297258 (+) True LOC120565491
TU127376 lncRNA downstream 136868 10296749 ~ 10297122 (+) False LOC120565491
TU127406 lncRNA downstream 179355 10339236 ~ 10405233 (+) True G94426
TU127407 lncRNA downstream 186316 10346197 ~ 10358788 (+) True G94427
XM_039811650.1 mRNA upstream 94443 9967354 ~ 9979742 (+) False fxr1
XM_039811525.1 mRNA downstream 203581 10363462 ~ 10414826 (+) True atp11b
XM_039812410.1 mRNA downstream 280677 10440558 ~ 10450982 (+) True kng1
XM_039812412.1 mRNA downstream 280677 10440558 ~ 10450982 (+) False kng1
XM_039812413.1 mRNA downstream 280703 10440584 ~ 10450982 (+) False kng1
XM_039812411.1 mRNA downstream 280704 10440585 ~ 10450982 (+) False kng1
TU127361 other upstream 125955 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 170996 9902285 ~ 9903189 (+) True G94376
TU127191 other upstream 194987 9817621 ~ 9879198 (+) True G94281
TU127611 other downstream 757044 10916925 ~ 10941244 (+) True G94598
TU127615 other downstream 787095 10946976 ~ 10948246 (+) False si:ch211-162e15.3
unassigned_transcript_388 other downstream 1088694 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 1269150 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 2845695 13005576 ~ 13100445 (+) True raver2

Expression Profile