RNA id: TU127746


Basic Information

Item Value
RNA id TU127746
length 335
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G94706
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11238444 ~ 11240237 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATTGAGTCTCATTTCAAGTTCCCAGAAAGTCAAAGATTTCATTGATACAAATTTACATctgcaatttatttttttattattcttttacTACAAGTATACAAAACTGACAGACAAATCTATGAAAATGGATCTTATTTACAGAAACAATTGTTGAAGGTGGATAGGGGCTGGACAGGCATGCTGTGCTGGTTTCAAAGATCAGGAAAGAGACGAGGACGGTCATGATGAAGACTCGACAGAGGCCGACTGCTTAGCAGACTTTCCTGACGAGGTGGGAGATGTTCGAGACGGCTTTGGAAGACGAGGCACTGTCAGACGATTTAACTGGGATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127731 lncRNA upstream 43514 11194647 ~ 11194930 (+) True G94691
TU127730 lncRNA upstream 62227 11176004 ~ 11176217 (+) True G94690
TU127728 lncRNA upstream 111424 11126756 ~ 11127020 (+) True G94688
TU127727 lncRNA upstream 116760 11121469 ~ 11121684 (+) True G94687
TU127726 lncRNA upstream 118563 11119390 ~ 11119881 (+) True G94686
TU127799 lncRNA downstream 336551 11576788 ~ 11577261 (+) True G94747
TU127840 lncRNA downstream 411285 11651522 ~ 11659072 (+) True G94779
TU127859 lncRNA downstream 581414 11821651 ~ 11821882 (+) False znhit6
TU127883 lncRNA downstream 676394 11916631 ~ 11920037 (+) True G94813
TU127963 lncRNA downstream 921401 12161638 ~ 12196616 (+) False lrp8
XM_039811528.1 mRNA upstream 543 11222522 ~ 11237901 (+) True ccdc17
XM_039811350.1 mRNA upstream 131246 11105141 ~ 11107198 (+) True LOC120565506
XM_039811575.1 mRNA upstream 290128 10946932 ~ 10948316 (+) True si:ch211-162e15.3
XM_039812278.1 mRNA upstream 478515 10748929 ~ 10759929 (+) True LOC120566056
XM_039812279.1 mRNA upstream 504483 10722915 ~ 10733961 (+) True LOC120566058
XM_039811329.1 mRNA downstream 8197 11248434 ~ 11304093 (+) True LOC120565497
XM_039812317.1 mRNA downstream 71501 11311738 ~ 11356871 (+) True LOC120566075
XM_039812048.1 mRNA downstream 119453 11359690 ~ 11458146 (+) True LOC120565923
XM_039810317.1 mRNA downstream 233119 11473356 ~ 11490038 (+) False LOC120565022
XM_039810318.1 mRNA downstream 233119 11473356 ~ 11490038 (+) False LOC120565022
TU127615 other upstream 290198 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 297200 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 1078637 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 1290214 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 1335255 9902285 ~ 9903189 (+) True G94376
unassigned_transcript_388 other downstream 8338 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 188794 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 1765339 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 1932788 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 2139161 13379398 ~ 13382744 (+) True LOC120564964

Expression Profile