RNA id: XM_039812048.1


Basic Information

Item Value
RNA id XM_039812048.1
length 6663
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC120565923
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11359690 ~ 11458146 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGAGCGGAGATCCACCAGCAGTGTATCCGCTTCAGTCCCcgctgactcacacacacatacaaacacacacacacacacacacacactgagggcTGAGATGTGACTGTTTACCAGAGGAATACAGCGTGTTTCTTGTGGGATTTTTATTGTCAGCCGGATAATGGGAGAAGACATGCGGGGAGGCATTTTAACCATGCGGGCCACTTGGGTTGCGGTGCTTCTCTGTGTGATGACTTCGGTGTGCGCAGTGGAAGAGACGGTGATGGATACAAGGACAGCGACAGCTGAGCTCGGCTGGATATCGTTCCCTGCCAACGGATGGGAGGAGGTGAGTGGTTATGATGAAAACCTCAACACCATCAGGACCTACCAGGTGTGCAACGTGTTTGATCCCAGCCAGAACAACTGGCTCCTCACGACTTATATCGACCGGCGGGCTGCGCAACGCATCTACGTGGAGATCCGCTTCACTGTACGCGACTGTGCCTCCATCCCCAGCGTCCTGGGCTCCTGCAAAGAGACATTCAACCTGTACTACCTGGAGACAGAAAGGACGTTGTCACAGAGCATCAAAGGGGTGGAGTACTGGGCCAATGCCCCTTTTCTTAAGGTGGACACCATCGCAGCAGATGAGAGTTTCTCCCAGGTGGATTTCGGTGGAAGGCTAATGAAGGTGAACACAGAAGTTCGGAGTTTCGGGCCGTTGTCCAAAGGCAGAGGCTTCCACTTGGCCTTCCAGGATTTGGGCGCTTGCATGTCTCTTCTGGCTGTCAGAGTGTTCTATAAGAAATGCCCCAGCGTGGTGCAAAACTTTGCCTTTTTCCCAGAGACGCTGACTGGAGCAGAGTCCACCTCATTAGTCATCGCTAGAGGAAGTTGTATCCCTAACGCTGAGGAAGTAGACGTGCCCATAAAGCTCTACTGTAACGGAGATGGAGAGTGGATGGTACCCATCGGCAGCTGCAGCTGCAAAGCGGGTTATGAACCAGACAATGGCAACGTGTGTCGAGcttGCCCTCAGGGGACCTTTAAGTCGTTCCAGGGGGCAGGATTATGTAAGCAATGTCCGCTCAACAGTCGCTCCACCATCGAGGCCGCCACCATCTGCGTTTGTCGCAACGGCTATTACCGTGGAGACATGGACAAACCAGAGGACGTGTGCACCAGTGTTCCTTCAGCTCCGCGCAACGTGGTCTCAGTCGTCAACCAGACATCGGTGCAGCTGGAGTGGCACCCCCCACGTGACACTGGGCACCGTGACGACATGTCATACAACGTTTTGTGCCGCCGGTGCCACAGTAGCGAGCGCCGGGCATGTCAGCCATGTGATGACAGCGTGGTATTCGTTTCAGACAAGCAAGGGTTAAAGGAAACGAGGGTGGAGATCAGCAAGCTGCGGGCCCACACACCTTACACCTTCGAAATACAGGCAGTAAACGGAGTCTCCAACAAGAGCCCTTATCCCGCCCAGCAACTGTCAATCAACATTACAACCAATCAGGCTGctccCTCTGTAGTTCCCATAATGCACCAAGTGAGCTCAACAAGCCGCAGTTTCTCGTTGTCATGGCCACCGCCCGAACAGCCCAACGGAATTATCCTTGACTACGAGATTCGATACTTTGACAAGTCCCTGTCGTCAGTGCTGAACAGTTCAGTGGTCCAGAGCGAAACACCTAATGTTGTTCTGGAGGGTCTGAGGCCGGGGACCGGCTACGTGGTGCAGGTGAGGGCCCCCCGCTGGGCGCGCGATACCCTGGCCACAGCAAAAATGCTCTTCCAAACCTCACCGTAAAatGAGTATAAGTCAGAGCTAGGACAGCAGCTCTCCCTGATTGCAGGCTCTTTAGTAGGTGGAGTATGTATCGTCTCATTGGTAGCTATCGCCATCATCTGCACCAGaaGAAGGCAGTTGAAAGAGAGTGTGTATGGTGACAAGCTGCAGCAGTACAACGCAGGAGGAGAGGTGACTCTGAGGCCTGACATGTTCAGTGGTCCTACCCCCACTGTGACATTTCCCACCCTGTCTGAAGGCCATAGTTCACCGGGGGTCAAGATCTACATTGACCCCTTCACCTACGAGGACCCCAACGAGGCCGTCAGGGAGTTTGCCAAGGAAATTGACCCCTCCTGTGTCAAAATAGAGGAAGTCATTGGATCAGgtGAATTTGGGGAGGTGTACAAGGGCCGCCTAAAGCCTGTTGGGAAAAAAGAAATTCCTGTGGCCATCAAGACACTGAAGGTTGGCTACTCTGAGAGGCAGAGGAGGGACTTCCTGTCCGAGGCGTCAATCATGGGCCAGTTTGACCAACCAAACATCATCAGACTGGAGGGCGTGGTCACCAAGAGCAGGCCTACGATGATCATCACAGAGTTCATGGAGAACGGAGCACTTGACTTGTTTCTCAGGCAAAATGATGGGCAGTTTCCAGTGATCCAGCTTGTTGGTATGCTGAGGGGCATCGCGTCTGGAatgagGTACCTTGCGGAAATGAGTTATGTTCACCGGGACCTGGCTGCTCGGAACATCCTGGTTAACAGTAACTTGGTGTGTAAGGTGTCTGACTTTGGATTATCACGTTATCTGGAGGAGGACACCTCTGACCCTACCTACACCAGCTCACTGgGTGGTAAAATCCCAGTGCGGTGGACGGCTCCGGAGGCGATTGCCTACAGGAAGTTTACGTCAGCTTCAGATGTCTGGAGTTATGGGATCGTCACCTGGGAGGTGATGTCATACGGAGAGAGGCCTTACTGGGACATGAGCAACCAagatGTGATAAATGCCATCGAGCAGGACTTCAGGCTGCCAGCTCCCATGGACTGTCCGGTCGTGCTGCACCAGCTGATGCTGGACTGCTGGCAGAAAGACAGGAACGCACGGCCAAAGTTCCCCGATATTGTCAGCATGTTGGACAAAATGATACGCAACCCTGCATCTCTCAAAGCCGGCATCAACAACATCGCCCCTGGTCCTTCCCATCATCCTTTGTTAGACCGTGGCGCTCCAGACCTGAGCAGGTTGAGCTCTGTGGAAGACTGGCTGGCTGCGTTGAAGATGACCCAGTATCGAGACTCCTTCCTGGGCTCGGGCTTCACTTCTTTGCCGCTCGTCACACAAATCACAGCCGAAGATCTTCAGAGGATTGGAGTGTCTTTAGCCGGACACCAGAAGAAAATCCTGACCAGTGTTCAGTCGATGAGGCCCAACATTGATGACCAGTCTCCTACTGAATCTGTGTAACCGCACAGGGGAGCGACACAGTATGAAATATTCGACACGTGTACAGTCTGAACGAGCAAGCTGTCATCTTTACGCTTGTTTTACCCTCATACCTAAATCTAAACCACTTTACAAGTTTTTTAACAATCCCTgtggccatttttgtgtctgtgtgtcctcaGCAGTCCCTAGGTCCCTCCTTCATTCAGTGGACAGACTTCACACCTTTAAGAAAATTGATTTAAACTAAATGTTAACCAGTAAACTTAGGTTGGGGAGCATGGACACTCTTCAACCACACCTCTAATCACTTGTAAGGCCTACCTATCAAACCATCCTGTACAGTTTGTCTCAGTTTTCTCAACCCACCCTCCCTTTCTCATCCATTCTGCCGGACCCCACCTCTCCATTTCCATCCCCCTCATCCCAACCCCATCCCTCCCCCTAATGAATTTACCCACGAGACCATCCATTCCCCTGCTCATCCCTATTCATCCCATCTTATTCAATGCTGTGCATACCTGTCCCAGCCTCCAGGTACTGTCTGAGGCATGTTGAGGGACTCCAGAGTCCCCTCCTCCCCAGCCTTCATACATCTTTCCCAGACAGGCCTAACCAGTCAACCTCCTCATCACCTTCTTTGAATTCGTTCATCCATCCTCAAGATCCtcattttattaaacctttaCATAATTGCATGGTTGTGGTGGGGTCCTTGCTAGTGAAATGCTTCTTGGAGGGAATTCAATGCAGATTTAGTGCAAGAGGAAAAACAAGGCAGACATGATTTGTGACTGCAAAAAAACCaagaaaaaaaccccaaaacaatAGTGTCTGGACTTTTCTGTCTGACTACAACCGGTACAATCACAAACCCCCATTCCCTCTCTCGCCCCAAAATCTCCCTGCAAGATCACTTCCATCATTGAAATCCACAGACCAGTTTATACCAGCTTGACTGTTTGATTCAAGGACAACATGGCCTGGTTTTTATGTAAGGATAAATCACACAAACGTGCTACTGTGAAGAGGAAACTGACCAAACAGACATTTATGTGAAGGGACACAAACTGGACGAATAGCCTGACAAAAGGTCTTTCTGGAGACCCATTGCAGGCTTTTTCATCTGCAGTGTGTTCTGTTGAGACTACTTCAGTGTGTTGGTGAAAATTGTGACCATTTGAATCCAGACAAGAGCCAACAGTTAATGGGACTTTGTGAATCCATCTTCATATTGAAGAGACTGTACATATTATGATATGGGATGTTAATTTCCTATTTGCTCATTTGCTTTCACTTTTGCCGACAGCATCAAACAATTAATTGTCACTGGAGTATTTTGTGAGCTCTGTATGATTATCTTCCTCTGCCTGACTCATCACTGGAACAAACTTTTAAGTGCTGTGGATGGCaggcaaaaaaaactaaagaaaaataGGTTTCATGCTTCTATTTTTTGTACTTCCCATGCAGCAAAAGGAAAAAGATAACCTCTTCGACAAAGAGAGCTAGCAAAGCCTGACCTACTTAAAATACTTAAATCAAAGGTTACTCATAATGGATGGTGTTTTACAATCAGCACATATACCCTCTGAGTAAAGGCAGTGACAGGCAACGGAAAACAAAATTGGATAAAGAAATATTAAACCATTGCAGTGTAATGTGCATTTTCCCAGCTAGGAATGAATGCAGGCTTTAGAGAATAGAAGAAAAGGAAAACCAGCTTAAGAGACTGTAGATATGGAGTCATTATCAGCTGCTGAGACACCCCTGTTGTGGCCAGAGAATCTCAAAAAGCTAAAAGGTGAACCATCCAACGTTCTTGTGATTTGGCTGCAAATCCTAAAGCTGTCTGCCAGTCAGGCATTAATACAACGCATGGACAAACCAGACATCTAATGGTGGTGTACTATTTGCGCATGAAACAAATCTCATTTCTGTCGAAAGTGTATGGCTGCAGTCCAGATGGTAATCACTCTACAGTAGGCAACCTTTGTATcaatttgttttagtttttattcatTGGCTGTCGGACATGTCATTATTGTCCGAGTCGCATTTCCTCCCGATTGACTGTCAGTTTGCAGATGAAATGACATGAAGTGACTGTGATCTGTGGACAGCAACCTTTTCAATGGCGGGCATTACGCAGAACTCATTTACAAGCAACACAGACTGATTTCTCAGACATGTCAGAGAAAAAGATCTAACGAGAAGAGATAGCGAAATAATAAAATGCTGGAGGGGTCAAGAAGGAAATTGCTGGCGTATTTATCATGTTTTGGTGCAGAAATGTGATGTTTGACTCACTCATCTTCACAAAATATGACACCAAGAATGCCTGATCTCCCTCTGGGGCCCGCTGGTGGAGAAGCACTAGGAGATTTCTTTTATCTTAGCGCTGAGCAGATTACCAGCTGTGAAACAACAGCAGGCTCGCTCTGCCTTTAGCCCAAACCTCTTGGTCATGCGTGTGCCCCCACATCCCAAGGATTACCAGTCCGCAGCACTGATTGGatgttgtgatttttatttgCCATTCCCCTTGGAaccatgctcacaatgacagaAGTGACTGTATTTAGTTGTTTGCTTTCAACACGTTTTTTACGGCTGACATGTCCTACAGGACgatgtgtttgtatttttgtctcgCACCGCTGCTCTCCACTGGACGGCCCAAACTCTTTTATTAATGAATGTTGTGACATTGAGAGGTCCGCGACTATTTAAAACCTCTAAACATTTCAGTTTCCACTTTTTTATGGGGGCAAAACTCTGCTCCGCCGGAATTGCATTTGTTGCCTGGCAACGATAGCTTATTGAACATTTTATCAGGAAGTATAGAGATCAACTGGGAGCTTGTCAGTGGTTCAGAGGCATAATTCATTGTAAATAGATGCCTGCGGAAAAAACAGTTTCAGCGCTCGGGGGGTTTAACAAAGAGTGAGTCGATGAGTGTAAGGTCATATTGAACACcatctaaacaaaaaaaaatgtcatgcagAAGAAATGAAAGCTATCAACACATACACTACAGGCTTCTTAGTGTAACATGGACTGTAGCTACGTGTGATGTGTCTATCCTTTGCTtcgtgttttcttttcttcaatgTAATAAGGTTAGATGTGAGCTTCCAAAGGCATTTCACATGTTCCTGTGTCAGTGTTTGAGAAGGACATAAATGATCCACAGCACGTcttgtatttaatattttgacatgTCTTGGTTTGAGCGCAAATATACAACCCAGAGAGAATATCTCGGGGACAAAGCAGATGTGAGTTTTGTCCAAAGTGCTGCGTAAAATAGGATGGTTTATTGGTACATCACGCACTATTTAAAAAGATACAGGATGAAGTGCTTTAAGAGTTCATGGAGAAAACTGTTTGATGTTAGTTTTCTGAAGTGCTTATTAAAAGTTAAATCCACTCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127746 lncRNA upstream 119453 11238444 ~ 11240237 (+) True G94706
TU127731 lncRNA upstream 164760 11194647 ~ 11194930 (+) True G94691
TU127730 lncRNA upstream 183473 11176004 ~ 11176217 (+) True G94690
TU127728 lncRNA upstream 232670 11126756 ~ 11127020 (+) True G94688
TU127727 lncRNA upstream 238006 11121469 ~ 11121684 (+) True G94687
TU127799 lncRNA downstream 118642 11576788 ~ 11577261 (+) True G94747
TU127840 lncRNA downstream 193376 11651522 ~ 11659072 (+) True G94779
TU127859 lncRNA downstream 363505 11821651 ~ 11821882 (+) False znhit6
TU127883 lncRNA downstream 458485 11916631 ~ 11920037 (+) True G94813
TU127963 lncRNA downstream 703492 12161638 ~ 12196616 (+) False lrp8
XM_039812317.1 mRNA upstream 2819 11311738 ~ 11356871 (+) True LOC120566075
XM_039811329.1 mRNA upstream 55597 11248434 ~ 11304093 (+) True LOC120565497
XM_039811528.1 mRNA upstream 121789 11222522 ~ 11237901 (+) True ccdc17
XM_039811350.1 mRNA upstream 252492 11105141 ~ 11107198 (+) True LOC120565506
XM_039811575.1 mRNA upstream 411374 10946932 ~ 10948316 (+) True si:ch211-162e15.3
XM_039810317.1 mRNA downstream 15210 11473356 ~ 11490038 (+) False LOC120565022
XM_039810318.1 mRNA downstream 15210 11473356 ~ 11490038 (+) False LOC120565022
XM_039810319.1 mRNA downstream 15778 11473924 ~ 11490038 (+) True LOC120565022
XM_039812473.1 mRNA downstream 56812 11514958 ~ 11523948 (+) True si:ch211-262h13.5
XM_039812239.1 mRNA downstream 67324 11525470 ~ 11549098 (+) False LOC120566036
unassigned_transcript_388 other upstream 111043 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 411444 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 418446 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 1199883 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 1411460 9947106 ~ 9948230 (+) False ttc14
XR_005640174.1 other downstream 1547430 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 1714879 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 1921252 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 3161212 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 3352222 14810368 ~ 14916606 (+) False dennd1b

Expression Profile