Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU127967 |
| length | 1504 |
| lncRNA type | sense_over |
| GC content | 0.38 |
| exon number | 2 |
| gene id | lrp8 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_053120.1 |
| NCBI id | CM020917.1 |
| chromosome length | 41568296 |
| location | 12161638 ~ 12443080 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU127963 | lncRNA | upstream | 115207 | 12161638 ~ 12196616 (+) | False | lrp8 |
| TU127883 | lncRNA | upstream | 391786 | 11916631 ~ 11920037 (+) | True | G94813 |
| TU127859 | lncRNA | upstream | 489941 | 11821651 ~ 11821882 (+) | False | znhit6 |
| TU127840 | lncRNA | upstream | 652751 | 11651522 ~ 11659072 (+) | True | G94779 |
| TU127799 | lncRNA | upstream | 734562 | 11576788 ~ 11577261 (+) | True | G94747 |
| TU128119 | lncRNA | downstream | 506996 | 12865015 ~ 12865841 (+) | False | ror1 |
| TU128136 | lncRNA | downstream | 507893 | 12865912 ~ 12866251 (+) | True | G94997 |
| TU128141 | lncRNA | downstream | 637216 | 12995235 ~ 12995654 (+) | True | G95002 |
| TU128143 | lncRNA | downstream | 740768 | 13098787 ~ 13100338 (+) | False | raver2 |
| TU128168 | lncRNA | downstream | 749670 | 13107689 ~ 13112320 (+) | True | G95027 |
| XM_039812334.1 | mRNA | upstream | 250198 | 12056138 ~ 12061625 (+) | True | ebna1bp2 |
| XM_039811811.1 | mRNA | upstream | 297389 | 11981529 ~ 12014434 (+) | True | ap1m3 |
| XM_039812475.1 | mRNA | upstream | 331537 | 11970363 ~ 11980286 (+) | True | c9h1orf210 |
| XM_039812476.1 | mRNA | upstream | 331537 | 11974465 ~ 11980286 (+) | False | c9h1orf210 |
| XM_039810766.1 | mRNA | upstream | 395250 | 11852003 ~ 11916573 (+) | False | ddah1 |
| XM_039812104.1 | mRNA | downstream | 92033 | 12450052 ~ 12459145 (+) | True | usp1 |
| XM_039812105.1 | mRNA | downstream | 92033 | 12450052 ~ 12459145 (+) | False | usp1 |
| XM_039810642.1 | mRNA | downstream | 136735 | 12494754 ~ 12499047 (+) | True | angptl3 |
| XM_039812171.1 | mRNA | downstream | 154587 | 12512606 ~ 12520145 (+) | False | atg4c |
| XM_039812170.1 | mRNA | downstream | 154597 | 12512616 ~ 12522434 (+) | True | atg4c |
| TU127781 | other | upstream | 867290 | 11429031 ~ 11444533 (+) | False | LOC120565923 |
| unassigned_transcript_388 | other | upstream | 1063176 | 11248575 ~ 11248647 (+) | True | trnam-cau_8 |
| TU127615 | other | upstream | 1363577 | 10946976 ~ 10948246 (+) | False | si:ch211-162e15.3 |
| TU127611 | other | upstream | 1370579 | 10916925 ~ 10941244 (+) | True | G94598 |
| TU127375 | other | upstream | 2152016 | 10074206 ~ 10159807 (+) | False | LOC120565490 |
| XR_005640174.1 | other | downstream | 647557 | 13005576 ~ 13100445 (+) | True | raver2 |
| TU128204 | other | downstream | 815006 | 13173025 ~ 13220372 (+) | True | G95046 |
| XR_005640172.1 | other | downstream | 1021379 | 13379398 ~ 13382744 (+) | True | LOC120564964 |
| TU128764 | other | downstream | 2261339 | 14619358 ~ 14621413 (+) | True | G95460 |
| XR_005640328.1 | other | downstream | 2452349 | 14810368 ~ 14916606 (+) | False | dennd1b |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | TU38129 | True | 205 | lncRNA | 0.43 | 1 | CI01000004 | 14525935 ~ 14526139 (-) |
| grasscarp (Ctenopharyngodon idella) | TU184054 | True | 1640 | TUCP | 0.41 | 1 | CI01000030 | 8237965 ~ 8239604 (+) |
| rainbow trout (Oncorhynchus mykiss) | TU2553862 | True | 3890 | lncRNA | 0.39 | 2 | NC_050570.1 | 39347057 ~ 39350968 (-) |
| striped catfish (Pangasianodon hypophthalmus) | TU38129 | True | 3287 | lncRNA | 0.38 | 2 | NC_047596.1 | 23456070 ~ 23459381 (+) |
| bowfin (Amia calva) | TU184054 | True | 531 | lncRNA | 0.32 | 1 | CM030140.1 | 19569473 ~ 19570003 (+) |
