RNA id: TU127973


Basic Information

Item Value
RNA id TU127973
length 2887
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id lrp8
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 12161638 ~ 12443080 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tATGTTCAGTTGTTTAGTTATTGTAGGACAGGCATGATGTGTAGGTACACTTGTTTCTCACTCCAGGTCCGTTTtttgttaattattattaacttGAAGTCTTTTCATTGTTAAGTCAGTAGTTGCTGCAGTGTTACATGTGCAACATGATAACTAGAACAAAGGTATTTAACACGCATCTTAAAGGTCAGTACatctcgtacatttcatttgtacagagagtctggccactctccattgacaagtgttaacttccttgaaggcgggtactctgttgaagtttaaaattactggatctgccataaccaatcgctaacgtttggtcgtgacgtcggcttagcatcgctagcgttcccCTTAGCCAagtccttcaccactaacggagcgagctggaaaatcaaacttttcatGAACCCcgtggccaccaacaaaactcagcaaagattgttcttgctcgggctttaacttcaggatattcggcagcgttgccacaacggaccgaatggcttcgctcgcatttTTTTCGGCCGCCATTATGGAACTATAACTCAAACTAGtgcacaacctcaacgtcatcgttctcagccactccctctgttcgctgattggaccggtaaagatttggccgAAGAAAACCCGcgaatcagtccctccagaaaaacgtgattatgcgattgcataattcaatgcataatcagccaaagtccgcatattcatgcgggggccgcattttttcaaatatgccgcactctCGCCGCATTaattgctgatttccgcgcaaaatatgcggtgcatgcatgatttcataatccccgcattttcattgcaaaaaagtcacatatatcttagcagaaagttgaaaaaattttgcgtttacttcacacaagagcagccattttcccctgttgccatgggaacgttatgaagtgacgtaattacgcgacgtgaacatcatcgaaaagcaggtggaggttgaatttgacatgtaggctactttgagtctcttaagttggtatccaataagaaaggtatcttaatatctgatgtgtactcaaatttctttgtttaagtgctcctgctgtctatattattaacgatttttgaaagtctgtctcttttgtatcttttatttccctcagtttagactattacttttacttttacattaatattatttgtatatatttttgtatcttatttgtttacttattgcaatgactgaatatctgtaaactatttttggaaattaagtttaaaaaaagcagggtgttgggggaatcactttttcttctctttttcatcaaaccgcagtttttgcaagttcccgcaataaaatcgcataaaattgcatcaataatcccgcatattccatcgcattttttaagaaaacgtgccgcataatcaagtatttttgcccgcaacaatcacaagaaacatttttctggaaggactggcgaatataccgcaaacccagacgacatactgaaggaaaattaaaattgagcggaagttcgtaggagggcggagccaggcggTTGCACCAGCAGTTCATAAATTCCAACTTTTGTGGAGATTGATGCATCACCAAATTAAAATGAGGTGTGACCACACAGACGTGCATAGAACTTGTATAGAGATTAGTTGTTACTAAAACCATTTTTGTGACTTCTGTTTGAATAGTTGATTGCTTGTGCTTCGTCAACACAGCAGATGTTTCTTAACAATGACACAGTGCTTAAATCTTTACTAGCTGAGACCTTCCTCATGTTTTAATGGTGAAACCCAATTTAACAAATCACTAGTTTGAAACTACAGTAGCTGGTTGTTACTAAATAGTTTAGAGGGACTTTacacacaactgtgtgtgtggatcaagggtgtaactttggttgTGGGGGAGACACAATACctggggtctgggggtcctccaccagaatttttttttttccaatttgaatcccatttcctgcatttctaaATTCATTTATAGGGACGAAGGTGATAcaaaatccaggaaataatTAGGTTGACCATAATGATAAATTATGCAAGAAAGAATAGTACCAAACTATGTATAAGAATCTTTATTGCTTAAAATAGGTGCCAGTCACAGAGACtcataaatcaaaataatatcaaaacaaatttGAAAGTGGGGGGGACACAAACAGGATTTTGGAGGGGGCGTGATTTATGAGCAGCTGGTGCAGCACAATCCAGGTTCTGAGAATCCGAGAATACATACGTCCCTGCTCAATAAAATGTCTATGATGTGTAGGCCTATTCATCTATAGACTGAACTCACACATTCATAAAGCATTGGGATGTTCCTCATAAACCCCTAATGCATAATAGGCAGGTTACTATCACACCTTAATTATGTCAAGCCATCCATAATAAGGTGGTGTCTGGTTTATTTTATACGAACACTGTTACATTATAAGCTCATTGTAGAAAATTCTAACAGCCGTGATAGCCCATAATCCAACATAATTTTAGTGTTCCTGATTTGTGCTCCCTGTTTTTTAACTCTCCCGTTGCAtgtccctctcttcctctctgtgctTTTTATCCTATCTTTTCTGAGCAGGGAATCTGACCCATGCCATTCTTTACCAGGATGCTCTGACTGCTTTCTAACATCACTCACCTCTCTCCACCACTTTATTTCCTCATGCACTGTATCAAAAGTAATGCCAGCTGTAAGGCTTCAAGTCTTTCCGTGGTTCCTATACTACTGAGTTTTTGTTGAGCCTAGTCAGCATTGCTGTCTCTGTGCACTCCCATCTTCATCTTAGCCATCGACATATTTCCTTTGGCAAGGGCTATCAGTCTTTGGGTTGACACTcgacaaacacacacacacacacacacacacacacacacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127963 lncRNA upstream 157057 12161638 ~ 12196616 (+) False lrp8
TU127883 lncRNA upstream 433636 11916631 ~ 11920037 (+) True G94813
TU127859 lncRNA upstream 531791 11821651 ~ 11821882 (+) False znhit6
TU127840 lncRNA upstream 694601 11651522 ~ 11659072 (+) True G94779
TU127799 lncRNA upstream 776412 11576788 ~ 11577261 (+) True G94747
TU128119 lncRNA downstream 423154 12865015 ~ 12865841 (+) False ror1
TU128136 lncRNA downstream 424051 12865912 ~ 12866251 (+) True G94997
TU128141 lncRNA downstream 553374 12995235 ~ 12995654 (+) True G95002
TU128143 lncRNA downstream 656926 13098787 ~ 13100338 (+) False raver2
TU128168 lncRNA downstream 665828 13107689 ~ 13112320 (+) True G95027
XM_039810700.1 mRNA upstream 59 12169510 ~ 12353614 (+) False lrp8
XM_039812104.1 mRNA downstream 8191 12450052 ~ 12459145 (+) True usp1
XM_039812105.1 mRNA downstream 8191 12450052 ~ 12459145 (+) False usp1
XM_039810642.1 mRNA downstream 52893 12494754 ~ 12499047 (+) True angptl3
XM_039812171.1 mRNA downstream 70745 12512606 ~ 12520145 (+) False atg4c
XM_039812170.1 mRNA downstream 70755 12512616 ~ 12522434 (+) True atg4c
TU127781 other upstream 909140 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 1105026 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 1405427 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 1412429 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 2193866 10074206 ~ 10159807 (+) False LOC120565490
XR_005640174.1 other downstream 563715 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 731164 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 937537 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 2177497 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 2368507 14810368 ~ 14916606 (+) False dennd1b

Expression Profile