RNA id: XM_039810704.1


Basic Information

Item Value
RNA id XM_039810704.1
length 6679
RNA type mRNA
GC content 0.47
exon number 19
gene id lrp8
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 12161638 ~ 12443080 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agggagagaggaaggagagagccGCTCCGATCACACACATTTCACACGCTCAGgagcagaggaagagagaggaacacACAGTCAGAGCGACTGAGAGGTTGGGGATCCTTAAGTGGTTTTTCACTTGCATGAACACAACCGTAGATCCCCCACCAGGATCTAAAGATGTGGACAGAAGTCGGGAAGCTTGTGCTATTACATTTGTTACTCATCGAGCTCCATTGCGCTAAAGGAACTACTACGGAGTTGGAGTGTGAAACCGGGCAGTTTCAGTGCAAGAACGGACGGTGCATCCCGACCCTGTGgcgatgtgatgatgatgatgattgctCAGACAGCAGCGACGAGGAGAACTGCCCAAAGAAGACATGTGCGACCACAGACTTTGCCTGTAAGAACGGACAGTGCGTCCCTGCTAGGTGGCGCTGTGATGGCGAACCGGAGTGTGCAGACGGTTCAGACGAGGCTGATGCGATCTGCAGCCGACAGACCTGTCCACCAGAGAAGTTTGATTGCGGAGGGGCTGCCAGCAAATGTGTTTCGTTGTCATGGCGATGCGACGGAGAGAGGGACTGCGAGAACGGGGCAGATGAGGACCAGTGCGCTGCAGATGCCAAGGCCTGCCCCTCCAAAGATTTCCAGTGTCGTAATGGGAAGTGCGTGGCACCAATCTTTGTGTGTGATGGAGACGACGACTGTGGGGATGCCAGCGATGAAGAGAAGTGCACGGCTCCCACTTGCGGCCAGCACGAGTTCCGCTGCAATGACTCTGAGTGCATCCCCGCCTTGTGGAGTTGCGACGGCGACCCGGACTGCAAGGACAAGTCAGACGAGTCCATGGAACGCTGCAGCCGAAGGACCGAGCCCCAGAAACCTCGCTGCCCAGTGGGCGAGTTCCAGTGTGGGAGTGGGGAGTGTGTCCACATGAATTGGAAGTGTGATGGAGACGCAGACTGCAAGGATAAATCGGATGAAGCAAACTGTCCGCTGCTTACATGTCGACCTGATGAGTTCCAGTGTGGTGATGGATCCTGTATCCACGGAACCAAACAGTGTAATAAAGTGCACGACTGTCCAGACTACAGTGATGAAGCTGGCTGTGTCAATGTTACAAAGTGCGACGGGCCAAGAAAGTTCCGCTGTAAGAACGGGGAGTGTATTGACAGCAGCAAGGTGTGTGACAATGTGAAAGACTGCAAGGACTGGTCTGATGAACCCATGAAGGAGTGTGGCCTGAATGAGTGTGCAGACAACAATGGCGGCTGCTCCCACATCTGCAGGGACCGCAGAATTGGCTATGAGTGCGACTGTCCTTCTGGGTACAAACTCCTGGACAAAAAGACTTGTGgagACATAGATGAATGTGAGAACCCAGATGCCTGCAGTCAGATCTGCATCAACTACAAAGGAGATTATAAGTGTGAGTGCTACGAAGGCTATGAGATGGACCCTGCCTCTAAGACCTGCAAGGCCGTGGGAAAGAGTCCGTACCTGATGTTCACTAACCGTCACGAGATCCGTCGCATTGACCTGCTAAAGAGTGAATACACTCAGGTGGTTCCCACGCTGAAGAATGCAGTGGCCCTGGATGTAGACGTGTCCACCAACAAGATGTTCTGGTGTGATCTATATCATCAAAAAATATACAGTGCTTACATCAACAAGGCCAGTGACTCCTCACAGCAGGTGACCCTCATCGACTCGCTCCACTCCCCCGAGGGTCTGGCCGTTGACTGGGTCCACAAGAACATCTACTGGACTGACTCTGGCAACAAGAGCATCTCCGTTGCCACAGGAGACGGCAGGAAGCGAAAAGTGCTGATAGCCACTGAGCTGACCGAGCCACGGGCCATCGCAGTGGATCCACACCAAGGGTTTATGTACTGGTCAGACTGGGGAGGTCAGGCCAAAATCGAGAAGGCTGGGATGAATGGAGTGGACCGACAAGTTCTGGTGTCCGAACACATCGAGTGGCCCAATGGAATAACCCTGGACTTGTCTAACAGGCGTCTGTACTGGGTGGACTCCAAGTTGCACCTGCTGTCCAGTGTGGATCTGAATGGGGACAACCGCAAAGTGCTTCTGTCCTCCCATCACCATCTGGGACACCCCTTCGCCCTCACTGTGTTCGAGGATCACATATATTGGACCGACTTGGAGGATGAAACGATATACAGTGCCAACCGACTGACGGGACATGATGTGGCAAAGGTGGCAGAGCACCTCAACAACCCCCTGGACCTGGTGGTGTTTCATGAACAGAGGCAGCCCAAGGCCCCAGATACCTGCAACATGGGCAGTCTGCCTAACGGTGGCTGTGAATACCTCTGTCTGAAGGCCCCCCAGATCACAGATCACTCTCCAAAGTACACGTGTGCTTGTGCTGATGGCATGGAGCTGGGACCAGACATGAGGCGCTGTGCTATAGTTCGACCCAGagcaaccacaacaacagcTGTGCCAACCAcctccaccaccatcaccactaCAACTCCCACCACAACCACGACAACAAGCGCTACAACAACTAGCACAACTATTACCAGCACCACGACTCCCCCTACCACGACCACAAGCTCCACTAGCACCTCTGCTGCTACGACACTCAGGCCCACAACCAGAGGGCTGATGACACCTGCCCCACCTCAGACCCCCAGGCGAACTTCTACGGAGCCACCTCCGACCCCCGCGGCCACGAGTACAGAGACGGACAGTTTCAGCAGGCCCAGTCAGAAgtccacatccacacacacgcCTCTACTGGGCCCAGTGGCCCCCAATAGCATTCAGAGAGAGAGCAACGCCAACCTCTCCCACAGAGGTAAGAATCATGCTGCGAGTGATCACTACCTCATAGGTAACAACATCACAGTAGCTGTTCTGGGGATAGTCATTCCTATCGTGGTCATCGGATTACTCTGCACCGGCGGATACCTGGTTTGGCGCAACTGGCGGCGCAAGAACACCAAGAGCATGAACTTCGACAACCCCGTTTACCGCAAAACCACAGAGGACGACGATGATGAAATCCACATCGGGCGGCACAGCGAGTCCATAGGCCACGTTTACCCGGCACGCGTGGCACTCAGTCTGGAGGATGATGGCTATCCATGAGGGGGGGGATGCAGCCTGCCCCCCTTCCCAATTCCATCCTGGCCCCTCCTCTCACCACAGCCTCTACACCACTACAATGAGGCCAGTACAAcgcagaggagaaagagaacgGGGTCCTCATTTTGCCTCCCCCTTTTGAGGAGCAGGGATGACATGTACTTCTTGTAAATCCCCCTTCCTCTCCTACTTTCTCCACTGGGGTAACATTACTACCACTACTAGCCACTACTACTTTCCTTAGTGCTAGTTTATTAGTAGTCTCTGCTccactcctctcttctctctgcctcttgTTAGCTGTAGTGGTGTGTAAAATGCTGCTTGATGATTTTGTTCAAACTAACCTCATTTGGCTGTCTCCGTGCACACTGTAAATAGAAGGCTGTCTGACCACCGTACAGGGGGAAAAAGCTGGCAttatttagaattcctcatatgacgttttatttatttgtatgtttcCTGTTGTAAATATGTAATCAGCATATCTCAGTGCTACAGAGTTACAGGCAGATGTGTTCAAGTTTGCAAGGATATAGAGTTGTAGGCAAGGATGTTATTTTCTTCATAGTACCCTTTACATCTTGAGTTTACtttacagatttttttcaaacagGGGAATGTCATCCTTTTTCACACCCAGCCTCTCAGAATCGCCCCTTGACATATTGTATGTAGGCAGGCAAAGCTAAATATAGCCAAGGggaaaggagacagaaagaaatgaTGGGGTTGTCTGCATGTTTGGAGGTGATTTCGGGGTGAAAGAGTTAGTAgggtgtttttttctcttttgaggGGAATAGGAGGATTTGTGCCACCAGAGGGTAGTGCCTCAAGGCAAAAATCAGCAGGGCAGAAAAGGCAAAGGATTATGGGTAATCCTCTCTCCTGCTATCAGAGGTGTGCGTACAGTCGATAATGAATTTGGGATTGTTTTCTCATTTGCGGCGGGTGTTAGGACTCACGCGTTCCTgagtttttgtttgtgtctgctgCAATCAATATGTTAGAGGTAAAACTTCATTTTCAGACAGCAGAGTGTCACAAAACACTTTTTGAGATATCAATGATGCTTTGAGGTACTGAGCTCTTTGACTTTCAACCCTAGCACTGAGCATGACTACacataaatactttttttgaaATTCAGAAGACAGGACACTTTATGTGGTTTCTAGAtatgtttacatttaaatgcaTAGTTGTGCATTCTGTATTGGAATCCTGTAGGGATGAAGTATAAATTAAGTATGAGAATGCAAGCAGCGTACTGATCTATtgacacaaatattttttacagcagtccatttttgttgtatttttggcTCCAGTAGTCTTTAACACTACATTATTCTTATAGGTATAGCTCCCACAACATCACTTTTCTTTCATTTGACATAACATGGTTTCATAACTTCCCAGTAAACATCAATCGCAGCATTTTAGTGGATTCACAGCACTGCTTTTGGTGTTTCTTAGCATGATAACTCCTCCCTCTTTAGTCCCCTATCTTGGCAGTGTGTTTTCTGGATGaggtggtgtgtgttttgttttttttatttttttttatttacacatataacataaaacaataaaaagaaacaatatATCATTTGCAATAGAAAAAGACTCCACATTTGAAAGGAATCACTTTCCGCTGTCACTGACTATTAAGTGTCGGTTGTTAGTGGCCCTGTTTTGTATGAGCAGATAAGTAATACGCCGAGGCTGACTGAGCCGAGCACTGATTTGATTTGAAAGCTGGATAGAGAGGAAGCGTGTAAACCAGCGTAAAGAGCTGATCTTTCATTGGCTTGCCACAGACTCCAGCCCATTGAATCACATGGAATTCATGCCCAGTGACTATTGCAATAATTGCACATGATGTGTTGTAATAGTAAGTTACTGGAGTCCGTTATGACGAGTTAATATGATCGCTGTTAAGAGTTATGGTAGAATAACAACTTTCCTATCCTGGATGTAATTTAGTGTCAATACAGGGCATCTTGAAGATGTTAAGCACACATATAATGCTTTATATAAAGTTTATAGGTGTTTTACTTTGTCCGAATTTTAGCTACAACACTGGTCTTCCATCATAAGAATAACAAATCCGAACAATGTGGCAATTCAGCTGAACTGAGCTAAgaaatgcttttgtttttcagatGTTCAGTCTTTTTTTAATAACGAGCAAAAACAAGTATAGAATGCAAAGATTAAAGTCTTCCATTGTAGGCTATAGACTCAGCGTATGCATTCATCTTACTATACAGACAGTAtgtgcatacaaacaaacaGTTGTTTAATGGTAGTTATTATTCATGGTTTCCTGGAAAGTTTTGTCCAGTGTGAATGCTCAGgaaaacagacaaagacaaaggtAAGCAGGAAATGACTGCCAGGATTTAGACTAAACTCTACGCAAACAGGTTTATGCTTGGAAGATGAATAGTGGGCCATTCATTTTGCTGGATTTCTGCTGATGTTGTGTCGCGGGATTCTGACCTCCCTCAGAAGGATGCCACTTTCTTCTCTCCGTTTATGATGCACAGTGGGGGATTTCTATGAACTGAATGTGACAAGTGGCATGCTAGACAGGGAAATTATAGTCCTCTCCGGGACTGCACTCCCCTACGTCTATCTAATGAAGCAGGATTGAGCACAAAGGGGAGGCCATCTCCCTTCATCTTACCCTTGCACAGATGAAgccaaataaaatgcattacaCAGTGGAGAAGACTGTAACACAGCTCAGCATATTCCCAGTGAGTTAGTTGGTTTGTTTTTGGCAGAATATAGGATTGACATGTAGGAGACAGTTTGAATTGGCACAGTTGCGTTTTGGTATAAACTGTGGtcattttttcatattttcattcGGTATGATGGCCGTGGGAATTGTTAAGAATGCTCACAATTTCAtatgttttcataaaaaaactaaatctaagTCCTAAAGGAAAGATGTAGATGATGTAAGATGCCAAGAAAGATGAAACCGGTCAGATATCTTTGTGAATTTAAGATTAAATAAATCACAAACCTGATGATGGATTGAACCCTGAACTCACTCCACATAGTTTCCTTCATGTCCATGTTTGCTGCAGGTCTAATGGAGTTCCATACGGAGGGTATTCAGTTAGGAGAATAAATTGCTTATTCATTGAGGTGACTGAGCGTGGCATTGTAGAAACGTTATTATTGCTACAGTGTGAAGACAGATTGGCTGGTCGACTTTGTGGCCACCTTGAGAGCCGCCCCTAAAGGACGCTAAACAGGTCCAGAAAGGGACTGGTATCATTCATCACATAGTAGGTAATAATTGTAGTGGTAGTAGAGGACATGCTTTGACAGTATGCTGTCTGGACATTCTTGATTCATATTGTTAGGAATCATTTAGGGCCTAACCAATGCCCTAATGGCAGCATAATCATAGTTTTACTATCAGTCagctccataaacaacatgacagTCAGAAGGATCAAGTTGAGCACTCTGCCTCATGCTGAAGAataatgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127883 lncRNA upstream 249474 11916631 ~ 11920037 (+) True G94813
TU127859 lncRNA upstream 347629 11821651 ~ 11821882 (+) False znhit6
TU127840 lncRNA upstream 510439 11651522 ~ 11659072 (+) True G94779
TU127799 lncRNA upstream 592250 11576788 ~ 11577261 (+) True G94747
TU127746 lncRNA upstream 929274 11238444 ~ 11240237 (+) True G94706
TU127958 lncRNA downstream 59 12353673 ~ 12443080 (+) False lrp8
TU127973 lncRNA downstream 59 12353673 ~ 12441861 (+) False lrp8
TU128119 lncRNA downstream 511401 12865015 ~ 12865841 (+) False ror1
TU128136 lncRNA downstream 512298 12865912 ~ 12866251 (+) True G94997
TU128141 lncRNA downstream 641621 12995235 ~ 12995654 (+) True G95002
XM_039812334.1 mRNA upstream 107886 12056138 ~ 12061625 (+) True ebna1bp2
XM_039811811.1 mRNA upstream 155077 11981529 ~ 12014434 (+) True ap1m3
XM_039812475.1 mRNA upstream 189225 11970363 ~ 11980286 (+) True c9h1orf210
XM_039812476.1 mRNA upstream 189225 11974465 ~ 11980286 (+) False c9h1orf210
XM_039810766.1 mRNA upstream 252938 11852003 ~ 11916573 (+) False ddah1
XM_039812104.1 mRNA downstream 96438 12450052 ~ 12459145 (+) True usp1
XM_039812105.1 mRNA downstream 96438 12450052 ~ 12459145 (+) False usp1
XM_039810642.1 mRNA downstream 141140 12494754 ~ 12499047 (+) True angptl3
XM_039812171.1 mRNA downstream 158992 12512606 ~ 12520145 (+) False atg4c
XM_039812170.1 mRNA downstream 159002 12512616 ~ 12522434 (+) True atg4c
TU127781 other upstream 724978 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 920864 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 1221265 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 1228267 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 2009704 10074206 ~ 10159807 (+) False LOC120565490
XR_005640174.1 other downstream 651962 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 819411 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 1025784 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 2265744 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 2456754 14810368 ~ 14916606 (+) False dennd1b

Expression Profile